Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_B15
(511 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S ... 93 1e-19
At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S ... 93 1e-19
At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C) ribo... 91 5e-19
At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S ... 91 5e-19
At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,... 39 0.002
At3g62070.1 68416.m06974 expressed protein hypothetical protein ... 27 5.5
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi... 27 5.5
At3g18310.1 68416.m02330 expressed protein 27 7.3
At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2... 27 9.7
At5g27220.1 68418.m03247 protein transport protein-related low s... 27 9.7
At1g80330.1 68414.m09404 gibberellin 3-beta-dioxygenase, putativ... 27 9.7
At1g12220.1 68414.m01414 disease resistance protein RPS5 (CC-NBS... 27 9.7
>At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 92.7 bits (220), Expect = 1e-19
Identities = 40/59 (67%), Positives = 52/59 (88%)
Frame = +1
Query: 151 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTP 327
+A + IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK P
Sbjct: 14 EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAP 72
Score = 84.6 bits (200), Expect = 3e-17
Identities = 37/49 (75%), Positives = 44/49 (89%)
Frame = +2
Query: 332 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 478
GEG+ TWDRF++R+HKRVIDL S ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 74 GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122
>At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 92.7 bits (220), Expect = 1e-19
Identities = 40/59 (67%), Positives = 52/59 (88%)
Frame = +1
Query: 151 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTP 327
+A + IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK P
Sbjct: 14 EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAP 72
Score = 84.6 bits (200), Expect = 3e-17
Identities = 37/49 (75%), Positives = 44/49 (89%)
Frame = +2
Query: 332 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 478
GEG+ TWDRF++R+HKRVIDL S ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 74 GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122
>At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C)
ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
Length = 124
Score = 90.6 bits (215), Expect = 5e-19
Identities = 39/53 (73%), Positives = 49/53 (92%)
Frame = +1
Query: 169 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTP 327
IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK P
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAP 74
Score = 84.6 bits (200), Expect = 3e-17
Identities = 37/49 (75%), Positives = 44/49 (89%)
Frame = +2
Query: 332 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 478
GEG+ TWDRF++R+HKRVIDL S ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 76 GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124
>At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S
ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992
Length = 124
Score = 90.6 bits (215), Expect = 5e-19
Identities = 39/53 (73%), Positives = 49/53 (92%)
Frame = +1
Query: 169 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTP 327
IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK P
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAP 74
Score = 84.6 bits (200), Expect = 3e-17
Identities = 37/49 (75%), Positives = 44/49 (89%)
Frame = +2
Query: 332 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 478
GEG+ TWDRF++R+HKRVIDL S ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 76 GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124
>At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,
putative similar to 30S ribosomal protein S10 GB:P02364
[Escherichia coli] (est matches suggest the N-terminal
extension)
Length = 191
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +1
Query: 112 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 291
A+ V S I +++P +IRI L S V +E C +++ A+ + GPV +P
Sbjct: 73 ASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLP 132
Query: 292 TKILRITTRKTP 327
TK K+P
Sbjct: 133 TKKRIYCVLKSP 144
Score = 30.3 bits (65), Expect = 0.79
Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +2
Query: 359 FQMRIHKRVID-LHSPSEIVKQITSINIEPGVEVEVTI 469
F++R H+R+ID L+ ++ + + +++ GV+VEV +
Sbjct: 154 FEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191
>At3g62070.1 68416.m06974 expressed protein hypothetical protein
F14M4.23 - Arabidopsis thaliana, PIR:T02193
Length = 228
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 15 KSYLKREVSPVQR*TIFDLKSCLSRPEFNKQHGSRCSVRQRHRETPGRGL 164
+ + V+P +R + L E NK +GS+CS+R++ RE +G+
Sbjct: 73 RGFYSLPVTPSRRRRKLTVSGELDANESNK-NGSKCSLRRQRREKKKKGV 121
>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 551
Score = 27.5 bits (58), Expect = 5.5
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +2
Query: 83 ISAGIQQATWQPL*CQAKTSRNPRQRSPLFTASGSLLLLAMCAHSRRS 226
+SAG ++ T P+ AKT+ P SP S LL L++ A S S
Sbjct: 406 LSAGKKKTTSSPVSSSAKTTSTPVSSSP--DTSSFLLSLSLAADSSSS 451
>At3g18310.1 68416.m02330 expressed protein
Length = 873
Score = 27.1 bits (57), Expect = 7.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 243 WSQETEAACKGPSPHANQDPA 305
W+ +++ C GPSP +DP+
Sbjct: 400 WNAQSQMFCFGPSPSVGKDPS 420
>At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2) /
HD-ZIP protein 2 identical to homeobox-leucine zipper
protein HAT2 (HD-ZIP protein 2) [Arabidopsis thaliana]
SP:P46601; contains Pfam profiles PF04618: HD-ZIP
protein N terminus, PF02183: Homeobox associated leucine
zipper, PF00046: Homeobox domain
Length = 283
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 404 RESVGRSLSCGFASENDPRSLNLH 333
+E +G SLS GF+ ++P +NL+
Sbjct: 5 KEDLGLSLSLGFSQNHNPLQMNLN 28
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 204 IARSKSDPDAVNRGDLCL 151
+A +K DPD+V RG +CL
Sbjct: 698 MAVTKLDPDSVRRGSICL 715
>At1g80330.1 68414.m09404 gibberellin 3-beta-dioxygenase, putative /
gibberellin 3 beta-hydroxylase, putative similar to
gibberellin 3 beta-hydroxylase GA4H GB:AAC83647
[Arabidopsis thaliana], GA4 [GI:2160454]
Length = 355
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 308 SPPVKLLGGEGSKTWDRFQMRIH 376
+P V L G+ SKTW FQ+ H
Sbjct: 56 NPDVTTLIGDASKTWGAFQIANH 78
>At1g12220.1 68414.m01414 disease resistance protein RPS5
(CC-NBS-LRR class) / resistance to Pseudomonas syringae
protein 5 (CC-NBS-LRR class) domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.
Identical to RPS5 (resistance to Pseudomonas syringae
protein 5)(gi:3309620)
Length = 889
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 272 RAQSACQPRSCVSPPVKLLGGEGSKTWDRFQMRIHKRVIDLH 397
R++ C R V P+++ + ++WD FQM++ K + H
Sbjct: 294 RSRDVCG-RMGVDDPMEVSCLQPEESWDLFQMKVGKNTLGSH 334
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,450,061
Number of Sequences: 28952
Number of extensions: 246154
Number of successful extensions: 576
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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