Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_B12
(402 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) simi... 101 2e-22
At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) simi... 100 3e-22
At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almo... 100 7e-22
At2g05330.1 68415.m00561 speckle-type POZ protein-related contai... 29 1.5
At4g00450.1 68417.m00062 expressed protein 27 6.2
At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger) fa... 27 6.2
At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transport... 24 6.4
At1g62220.1 68414.m07018 expressed protein 26 8.2
At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger) fa... 26 8.2
>At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) similar
to SP:Q43292 from [Arabidopsis thaliana]
Length = 95
Score = 101 bits (242), Expect = 2e-22
Identities = 46/82 (56%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +2
Query: 68 NKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRR 247
NK+HTLC RCGR S+HIQKS+C+ C YPAA+ R+Y+WSVKA MR+L+ V R
Sbjct: 13 NKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPR 72
Query: 248 RFRNGFKEGKPTPPK-KAVASS 310
RF+ GF+EG P+ K VASS
Sbjct: 73 RFKTGFREGTEAKPRNKGVASS 94
>At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) similar
to ribosomal protein L37 GB:BAA04888 from [Homo sapiens]
Length = 95
Score = 100 bits (240), Expect = 3e-22
Identities = 46/82 (56%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +2
Query: 68 NKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRR 247
NK+HTLC RCGR S+HIQKS+C+ C YPAA+ R+Y+WSVKA MR+L+ V R
Sbjct: 13 NKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPR 72
Query: 248 RFRNGFKEGKPTPPK-KAVASS 310
RF+ GF+EG P+ KA ASS
Sbjct: 73 RFKTGFREGTEAKPRSKASASS 94
>At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almost
identical to GB:Q43292
Length = 95
Score = 99.5 bits (237), Expect = 7e-22
Identities = 46/82 (56%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +2
Query: 68 NKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRR 247
NK+HTLC RCGR S+HIQKS+C+ C YPAA+ R+Y+WSVKA MR+L+ V R
Sbjct: 13 NKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPR 72
Query: 248 RFRNGFKEG-KPTPPKKAVASS 310
RF+ F+EG + TP KA ASS
Sbjct: 73 RFKTCFREGTQATPRNKAAASS 94
>At2g05330.1 68415.m00561 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain
Length = 215
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +2
Query: 80 TLCRRCGRSSYHIQK-SKCAQCGY 148
T C RCG +YH Q + C CG+
Sbjct: 186 TSCSRCGLITYHNQTGTSCCSCGF 209
>At4g00450.1 68417.m00062 expressed protein
Length = 2124
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 86 CRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVK 187
CRR R + +KS C Q P A +W +K
Sbjct: 788 CRRAKRPKMNDEKSSCYQGNSPIASDEEDNWWIK 821
>At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 255
Score = 26.6 bits (56), Expect = 6.2
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Frame = +2
Query: 68 NKTHT-LCRRCGRSS---YHIQKSKCAQCG 145
NKT LC CGR YH KC CG
Sbjct: 219 NKTQVILCNDCGRKGNAPYHWLYHKCTTCG 248
>At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transporter,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]; contains Pfam
profiles PF00005: ABC transporter, PF00664: ABC
transporter transmembrane region
Length = 1292
Score = 24.2 bits (50), Expect(2) = 6.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 93 DVVDRHITFKNQNAPNVDILQ 155
D+ RHI+FK + P+V I Q
Sbjct: 1047 DIELRHISFKYPSRPDVQIFQ 1067
Score = 20.6 bits (41), Expect(2) = 6.4
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +3
Query: 141 VDILQQNYDPTTGQ 182
+ +LQ+ YDP +GQ
Sbjct: 1093 IALLQRFYDPDSGQ 1106
>At1g62220.1 68414.m07018 expressed protein
Length = 153
Score = 26.2 bits (55), Expect = 8.2
Identities = 16/67 (23%), Positives = 27/67 (40%)
Frame = +3
Query: 87 AEDVVDRHITFKNQNAPNVDILQQNYDPTTGQ*RLSAGRLLELAACVI*RLSGGASVMVL 266
+ DV F N P+ + + Y T+GQ ++ GR +++ G A V
Sbjct: 58 SSDVYSSATGFNNPKGPDANAYENGYTSTSGQ-VIAKGRKARVSSASASTAKGDAKAAVT 116
Query: 267 KKGNQRR 287
+K R
Sbjct: 117 RKAAAAR 123
>At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 26.2 bits (55), Expect = 8.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 77 HTLCRRCGRSSYHIQKSKCAQCG 145
H C++C + S I+ KC CG
Sbjct: 348 HLFCQQCIQRSLEIRHRKCPGCG 370
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,164,437
Number of Sequences: 28952
Number of extensions: 131413
Number of successful extensions: 279
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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