Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_B11
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 195 4e-51
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 195 4e-51
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 135 5e-33
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 135 5e-33
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 135 5e-33
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 84 2e-17
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 41 1e-04
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 39 5e-04
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 38 0.001
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi... 31 0.19
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 29 0.44
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 27 3.1
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 5.5
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 195 bits (476), Expect = 4e-51
Identities = 97/148 (65%), Positives = 111/148 (75%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 447 IQKESTLHLVXXXXXXXXXXXXKNYSTPXXXXXXXXXXKLAVLRFYKVDENGKIHRLRRE 268
IQKESTLHLV K Y+TP +LAVL++YKV+++G + RLRRE
Sbjct: 61 IQKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRRE 120
Query: 267 CTGEQCGAGVFMAVMEDRHYCGKCHSTM 184
C CGA FMA +DR YCG+CH T+
Sbjct: 121 C--PNCGASTFMANHKDRLYCGRCHLTL 146
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 195 bits (476), Expect = 4e-51
Identities = 97/148 (65%), Positives = 111/148 (75%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 447 IQKESTLHLVXXXXXXXXXXXXKNYSTPXXXXXXXXXXKLAVLRFYKVDENGKIHRLRRE 268
IQKESTLHLV K Y+TP +LAVL++YKV+++G + RLRRE
Sbjct: 61 IQKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRRE 120
Query: 267 CTGEQCGAGVFMAVMEDRHYCGKCHSTM 184
C CGA FMA +DR YCG+CH T+
Sbjct: 121 C--PNCGASTFMANHKDRLYCGRCHLTL 146
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 135 bits (327), Expect = 5e-33
Identities = 65/70 (92%), Positives = 68/70 (97%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 447 IQKESTLHLV 418
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 135 bits (327), Expect = 5e-33
Identities = 65/70 (92%), Positives = 68/70 (97%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 447 IQKESTLHLV 418
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 135 bits (327), Expect = 5e-33
Identities = 65/70 (92%), Positives = 68/70 (97%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 447 IQKESTLHLV 418
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 135 bits (327), Expect = 5e-33
Identities = 65/70 (92%), Positives = 68/70 (97%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 447 IQKESTLHLV 418
IQKESTLHLV
Sbjct: 137 IQKESTLHLV 146
Score = 135 bits (327), Expect = 5e-33
Identities = 65/70 (92%), Positives = 68/70 (97%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 447 IQKESTLHLV 418
IQKESTLHLV
Sbjct: 213 IQKESTLHLV 222
Score = 135 bits (327), Expect = 5e-33
Identities = 65/70 (92%), Positives = 68/70 (97%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 447 IQKESTLHLV 418
IQKESTLHLV
Sbjct: 289 IQKESTLHLV 298
Score = 135 bits (327), Expect = 5e-33
Identities = 65/70 (92%), Positives = 68/70 (97%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 447 IQKESTLHLV 418
IQKESTLHLV
Sbjct: 365 IQKESTLHLV 374
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 83.8 bits (198), Expect = 2e-17
Identities = 35/70 (50%), Positives = 52/70 (74%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
M I VKTLTGK I L+++P+D + +K ++++KEGIPP+QQRL +AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 447 IQKESTLHLV 418
++ S LHLV
Sbjct: 61 LEGGSVLHLV 70
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 41.1 bits (92), Expect = 1e-04
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = -1
Query: 600 GKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYNIQKESTL 427
GK LE+EP++T +K ++ +PP +Q++ G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 39.1 bits (87), Expect = 5e-04
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDY 451
M + K L + + +DT I +K KIQ ++ +Q+L ++G+ L D +T+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 450 NIQKE 436
NI+++
Sbjct: 61 NIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
+ + +K + + V+ ++ +K I I +QRL +AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 447 IQKESTLHLV 418
IQ ++HLV
Sbjct: 64 IQDGHSIHLV 73
>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
Hub1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 73
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/69 (23%), Positives = 31/69 (44%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
+++ GK + ++ P DT+ + K + + G P + L +D TL+DY
Sbjct: 2 IEVLCNDRLGKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADYE 61
Query: 447 IQKESTLHL 421
I +L +
Sbjct: 62 IHDGMSLEM 70
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 29.5 bits (63), Expect = 0.44
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 106 NPSYTAVASVSYRLXGTYLFVVVFEXHRAVTLPAV 210
NP+YT SY L TYL F+ HR + AV
Sbjct: 144 NPAYTNSHQNSYSLNETYLSYDFFDNHRGASSSAV 178
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -1
Query: 324 VLRFY-KVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 166
V+R Y ++ +N + R C E F V++D H KC + ++ D
Sbjct: 224 VIRCYLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 516 PNQQRLXFAGKQLEDGRTLSDYNI 445
PNQ AGK+L+ R L DY+I
Sbjct: 476 PNQGDTRKAGKRLKYSRNLDDYHI 499
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,051
Number of Sequences: 5004
Number of extensions: 36848
Number of successful extensions: 87
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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