Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_B11
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 221 3e-58
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 141 5e-34
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 141 5e-34
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 141 5e-34
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 127 7e-30
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 72 4e-13
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 49 3e-06
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 45 6e-05
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11) 38 0.007
SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12) 38 0.007
SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05) 33 0.15
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01) 32 0.47
SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055) 31 1.1
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 30 1.4
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8) 29 4.4
SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5) 28 5.8
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 28 7.6
SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026) 28 7.6
SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 28 7.6
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 221 bits (541), Expect = 3e-58
Identities = 112/150 (74%), Positives = 116/150 (77%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 447 IQKESTLHLVXXXXXXXXXXXXKNYSTPXXXXXXXXXXKLAVLRFYKVDENGKIHRLRRE 268
IQKESTLHLV KNY+TP KLAVL++YKVDENGKI RLRRE
Sbjct: 61 IQKESTLHLVLRLRGGAKKRKKKNYTTPKKIKHKKKKVKLAVLKYYKVDENGKITRLRRE 120
Query: 267 CTGEQCGAGVFMAVMEDRHYCGKCHSTMVF 178
C E CGAGVFMA DR YCGKC T VF
Sbjct: 121 CPSESCGAGVFMASHFDRQYCGKCCLTYVF 150
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 141 bits (341), Expect = 5e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 447 IQKESTLHLV 418
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 141 bits (341), Expect = 5e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 447 IQKESTLHLV 418
IQKESTLHLV
Sbjct: 137 IQKESTLHLV 146
Score = 141 bits (341), Expect = 5e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 447 IQKESTLHLV 418
IQKESTLHLV
Sbjct: 213 IQKESTLHLV 222
Score = 141 bits (341), Expect = 5e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 447 IQKESTLHLV 418
IQKESTLHLV
Sbjct: 289 IQKESTLHLV 298
Score = 141 bits (341), Expect = 5e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 447 IQKESTLHLV 418
IQKESTLHLV
Sbjct: 365 IQKESTLHLV 374
Score = 141 bits (341), Expect = 5e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 447 IQKESTLHLV 418
IQKESTLHLV
Sbjct: 441 IQKESTLHLV 450
Score = 141 bits (341), Expect = 5e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 447 IQKESTLHLV 418
IQKESTLHLV
Sbjct: 517 IQKESTLHLV 526
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 141 bits (341), Expect = 5e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 447 IQKESTLHLV 418
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 141 bits (341), Expect = 5e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 447 IQKESTLHLV 418
IQKESTLHLV
Sbjct: 137 IQKESTLHLV 146
Score = 141 bits (341), Expect = 5e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 447 IQKESTLHLV 418
IQKESTLHLV
Sbjct: 213 IQKESTLHLV 222
Score = 141 bits (341), Expect = 5e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 447 IQKESTLHLV 418
IQKESTLHLV
Sbjct: 289 IQKESTLHLV 298
Score = 141 bits (341), Expect = 5e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 447 IQKESTLHLV 418
IQKESTLHLV
Sbjct: 365 IQKESTLHLV 374
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 141 bits (341), Expect = 5e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 447 IQKESTLHLV 418
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 79.8 bits (188), Expect = 2e-15
Identities = 40/69 (57%), Positives = 52/69 (75%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQI VK KT TL+VE SDT+E+VK KIQ++EGIPP QRL + ++L D R+L+DYN
Sbjct: 77 MQISVKA-HWKTFTLDVEASDTVESVKEKIQNREGIPPKVQRLLYEEEELVDNRSLADYN 135
Query: 447 IQKESTLHL 421
I++ S LHL
Sbjct: 136 IKQGSILHL 144
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 127 bits (307), Expect = 7e-30
Identities = 61/63 (96%), Positives = 62/63 (98%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRL FAGKQLEDGRTLSDYN
Sbjct: 79 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 138
Query: 447 IQK 439
IQK
Sbjct: 139 IQK 141
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 72.1 bits (169), Expect = 4e-13
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = -1
Query: 522 IPPNQQRLXFAGKQLEDGRTLSDYNIQKESTLHLV 418
IPP+QQRL FAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 2 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 36
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 49.2 bits (112), Expect = 3e-06
Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = -1
Query: 621 IFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYNI 445
I V TLTG+ I + + P TI VK I+ K G P +QQRL F G+ L D T I
Sbjct: 73 IAVLTLTGERILIPFKSPKHTIIEVKYLIEAKGGYPKDQQRLVFNGQVLSDEDTFEKVGI 132
Query: 444 QKESTLHLV 418
+TLHL+
Sbjct: 133 FAGATLHLI 141
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 44.8 bits (101), Expect = 6e-05
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = -1
Query: 633 VKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ---DKEGIPPNQQRLXFAGKQLEDGRT 463
V M I KTL +T +E+ +T+ +K KI+ K+ P +L +AGK L D
Sbjct: 65 VNMIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDNP 124
Query: 462 LSDYNIQKES 433
L +YNI ++S
Sbjct: 125 LKEYNIDEKS 134
>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
Length = 744
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -1
Query: 624 QIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
Q+F T TL +D + +K++I+ K GIP + QRL F K+L D TL+ N
Sbjct: 7 QVFAALPTEDVCTLRDLTTDMHVFQLKSRIELKTGIPGDIQRLHFMNKELYDDATLAKVN 66
Query: 447 IQK 439
+++
Sbjct: 67 LKQ 69
>SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)
Length = 348
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLED-GRTLSDY 451
M++ V G TL+V +EN +A ++ + G+P ++ L G QL D +TL+ Y
Sbjct: 1 MKVTVTGEDGSIFTLDVSVDLEVENFRALLEFESGVPASEISLYHDGVQLSDLKKTLTAY 60
Query: 450 NIQKESTLHLV 418
++++ + +V
Sbjct: 61 SVKENDVILMV 71
>SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 35
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 526
M ++++TLTG L V P +TI +VKAKIQ E
Sbjct: 1 MDLYIQTLTGTAFELRVSPFETIMSVKAKIQRLE 34
>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
Length = 198
Score = 33.5 bits (73), Expect = 0.15
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYN 448
MQ+ VKTL +T T V +EGIP +QRL F GK L+D + L +++
Sbjct: 1 MQVTVKTLDSETRTFTVS--------------EEGIPAERQRLIFKGKVLQDEKKLKEFD 46
>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = -1
Query: 636 RVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLS 457
R+++ + +G L++ + TIE ++ ++ DK G PP QR K + +L
Sbjct: 33 RLRVVVEDSETSGGAFNLQIPLNTTIEKLQNEVADKYGFPPKVQRWIIGKKMAKPNESLL 92
Query: 456 DYNIQK 439
+++
Sbjct: 93 QCKVRE 98
>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
Length = 792
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/64 (25%), Positives = 34/64 (53%)
Frame = -1
Query: 621 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYNIQ 442
+ ++T G T+ +E+ ++E++KA+ + + GIP RL LED + +
Sbjct: 185 MLLQTRGGSTLEIEITERTSVEDLKAEAELRVGIPVELIRLQVNKVNLEDSEKICERGHL 244
Query: 441 KEST 430
+++T
Sbjct: 245 QKAT 248
>SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055)
Length = 411
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -1
Query: 618 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGRTLSDYNIQK 439
FV G+ ITL P + ++ + G P + K LED T++D + Q
Sbjct: 169 FVVMPEGQVITLHCNPRQSFSELRNHFSSEFGQPAEAILMLHEDKILEDQGTIADLSHQP 228
Query: 438 ESTLHL 421
+TL +
Sbjct: 229 GATLQI 234
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 525 GIPPNQQRLXFAGKQLEDGRTLSDYN 448
GIP +QRL F GK L+D + L +++
Sbjct: 1 GIPAERQRLIFKGKVLQDEKKLKEFD 26
>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 564 TIENVKAKIQDKEGIPPNQQRLXFA-GKQLEDGRTLSDYNIQKESTLHL 421
T+ ++K + +K G+ + RL GK++ D L DYNI T+ L
Sbjct: 86 TVGDLKTMVTNKTGLHVSVFRLVIPEGKEMFDCNLLKDYNISTGDTIRL 134
>SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8)
Length = 180
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -3
Query: 574 AVRYHRECES*NSRQRGNPSQSTEVDXCWKAAGRWTYPXGLQY 446
+ Y +E E + RQR +S E D C K R+T Y
Sbjct: 39 STEYTQESEGLDERQRARGKKSFECDICGKCFSRFTITTKYNY 81
>SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)
Length = 635
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 300 ENGKIHRLRRECTGEQC 250
+ G+IH L++EC G QC
Sbjct: 106 DGGEIHNLQQECIGSQC 122
>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 205 AVVTVLHHRHEHSGA 249
A++TV+HHRH H A
Sbjct: 525 AIITVIHHRHHHHPA 539
>SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 794
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 312 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRH 211
YK D GK+ L+R C ++C ++ V D +
Sbjct: 364 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVDNN 397
>SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026)
Length = 309
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = -1
Query: 615 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLXFAGKQLEDGR---TLSDYNI 445
V + G+T + P +I +K KI + +QRL + +L++ + LS++ +
Sbjct: 60 VAMMGGETTVIPYNPVMSIAELKLKISQNIRVDRLKQRLMYNDTELKENKGSGKLSEFGV 119
Query: 444 QKESTLHLV 418
+T+ L+
Sbjct: 120 PPYATISLI 128
>SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1
Query: 312 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHS 190
YK D GK+ L+R C ++C + + C +C S
Sbjct: 515 YKCDNCGKVGHLKRVCQSKECKKXXXXQGGKPKTACHRCGS 555
>SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 1750
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 312 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRH 211
YK D GK+ L+R C ++C ++ V D +
Sbjct: 207 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVDNN 240
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,565,166
Number of Sequences: 59808
Number of extensions: 312248
Number of successful extensions: 770
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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