Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_B11
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.48 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.48 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.48 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.48 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.48 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.48 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.9  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 145 LXGTYLFVVVFEXHRAVTLPAVVTVLHHR 231
           L G+Y   ++F    +V L  +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 145 LXGTYLFVVVFEXHRAVTLPAVVTVLHHR 231
           L G+Y   ++F    +V L  +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 145 LXGTYLFVVVFEXHRAVTLPAVVTVLHHR 231
           L G+Y   ++F    +V L  +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 145 LXGTYLFVVVFEXHRAVTLPAVVTVLHHR 231
           L G+Y   ++F    +V L  +V + HHR
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 145 LXGTYLFVVVFEXHRAVTLPAVVTVLHHR 231
           L G+Y   ++F    +V L  +V + HHR
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 145 LXGTYLFVVVFEXHRAVTLPAVVTVLHHR 231
           L G+Y   ++F    +V L  +V + HHR
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 145 LXGTYLFVVVFEXHRAVTLPAVVTVLHHR 231
           L G+Y   ++F    +V L  +V   HHR
Sbjct: 324 LLGSYFNCIMFMVASSVVLTVLVLNFHHR 352


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 145 LXGTYLFVVVFEXHRAVTLPAVVTVLHHR 231
           L G+Y   ++F    +V L  +V   HHR
Sbjct: 324 LIGSYFNCIMFMVASSVVLTVLVLNFHHR 352


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 145 LXGTYLFVVVFEXHRAVTLPAVVTVLHHRH 234
           L GTY   ++F    +V    ++   HHR+
Sbjct: 293 LLGTYFNCIMFMVASSVVSTILILNYHHRN 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,170
Number of Sequences: 438
Number of extensions: 2596
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)