Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_B03
(549 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 111 3e-25
SB_49776| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.36
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23) 31 0.82
SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6) 29 1.9
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1) 29 1.9
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 29 1.9
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) 28 4.4
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0) 28 4.4
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0) 28 4.4
SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0) 28 4.4
SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25) 28 4.4
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_25040| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71) 28 5.8
SB_6077| Best HMM Match : EGF (HMM E-Value=0) 28 5.8
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_14940| Best HMM Match : fn2 (HMM E-Value=2.5e-08) 27 7.6
SB_12112| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 768
Score = 111 bits (268), Expect = 3e-25
Identities = 48/61 (78%), Positives = 56/61 (91%)
Frame = +2
Query: 125 YMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRI 304
Y+K YKVGDIVD++ NGAVQKGMPHKVYHGKTGRVYNVT ALGV+VNK+V+G+I+ KRI
Sbjct: 452 YLKCYKVGDIVDVKANGAVQKGMPHKVYHGKTGRVYNVTKRALGVVVNKQVKGKILAKRI 511
Query: 305 N 307
N
Sbjct: 512 N 512
Score = 30.7 bits (66), Expect = 0.82
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 36 MTNSKGYRRGTRXLVRSQVPH 98
MTN+KGYRRGTR + + H
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRH 443
>SB_49776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 31.9 bits (69), Expect = 0.36
Identities = 23/83 (27%), Positives = 35/83 (42%)
Frame = +2
Query: 158 DIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSK 337
DI G G+ GMP + G+V ++ A GV++ R ++ + H HSK
Sbjct: 102 DIEGTGSYNGGMPQEDLRNTIGQVADL--GAAGVVMWGNRRDENTSPQVCKHINHYIHSK 159
Query: 338 CRQDFLKRVKENERLLKEAKAAG 406
F+ R+K E K G
Sbjct: 160 L-GPFIHRMKTTAEKCSELKCRG 181
>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
Length = 565
Score = 30.7 bits (66), Expect = 0.82
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 350 FLKRVKENERLLKEAKAAGKTVNLKRQPA-PPKAAHIVSGTEKPVLLAPIP 499
F+KR + +R L+E A +NL ++PA P K + EKPV P P
Sbjct: 272 FVKRTQRRQRELEEVADA---INLAKRPAQPEKPLKFLVKVEKPVPRPPTP 319
>SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1551
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +2
Query: 50 GLPPRHQGTCSLAGSAHMELFRSP---RYMKVYKV 145
G PP + C+ AGS H ++R P RY VY++
Sbjct: 709 GAPPTQELPCAHAGSRHPSVYRYPTVIRYPAVYRL 743
>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
Length = 305
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 413 VNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 505
VN + PP A + ++ ++PVL P+P++
Sbjct: 130 VNKSKAETPPPAYYTITSNQEPVLNMPVPWQ 160
>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
Length = 271
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 296 KRINIRVEH-VKHSKCRQDFLKRVKENERLLKEAKAAGKT 412
+RI ++H ++ K +QDF+ +KE RL +E+++ T
Sbjct: 39 ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRSGAST 78
>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
Length = 3369
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 235 RDCSCSRCDCQQACSRKDYTEAHQYPC 315
+D +C CD Q C + T HQ PC
Sbjct: 2330 QDPNCGWCDSAQQCMPGNQTRPHQEPC 2356
>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
Length = 1458
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 296 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 475
K I + EH + S C Q F + N + ++ + GKT + + K HI+S +EK
Sbjct: 413 KNIELLTEHWECSGCEQRFNRHDNYNRHVTEKRCSGGKTQLICK---GEKFKHIMSSSEK 469
>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1020
Score = 28.3 bits (60), Expect = 4.4
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +2
Query: 122 RYMKVYKVG--DIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIP 295
R+ K ++G DI+ R +Q +P K++H ++ H V + R R
Sbjct: 494 RHWKKLELGKDDILRRRIGPRLQLVLPRKLHHLVYKELHEEMGHLGAERVLQLARDRFFW 553
Query: 296 KRINIRVEHVKHSKCRQDFLKRVKENER 379
R+ +EH S CR KR K +R
Sbjct: 554 PRMQQDIEHYVTSVCRCIKQKRPKHAQR 581
>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1387
Score = 28.3 bits (60), Expect = 4.4
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +2
Query: 122 RYMKVYKVG--DIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIP 295
R+ K ++G DI+ R +Q +P K++H ++ H V + R R
Sbjct: 731 RHWKKLELGKDDILRRRIGPRLQLVLPRKLHHLVYKELHEEMGHLGAERVLQLARDRFFW 790
Query: 296 KRINIRVEHVKHSKCRQDFLKRVKENER 379
R+ +EH S CR KR K +R
Sbjct: 791 PRMQQDIEHYVTSVCRCIKQKRPKHAQR 818
>SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1623
Score = 28.3 bits (60), Expect = 4.4
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +2
Query: 122 RYMKVYKVG--DIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIP 295
R+ K ++G DI+ R +Q +P K++H ++ H V + R R
Sbjct: 1282 RHWKKLELGKDDILRRRIGPRLQLVLPRKLHHLGYKELHEEMGHLGAERVLQLARDRFFW 1341
Query: 296 KRINIRVEHVKHSKCRQDFLKRVKENER 379
R+ +EH S CR KR K +R
Sbjct: 1342 PRMQQDIEHYVTSVCRCIKQKRPKHAQR 1369
>SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25)
Length = 440
Score = 28.3 bits (60), Expect = 4.4
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +2
Query: 122 RYMKVYKVG--DIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIP 295
R+ K ++G DI+ R +Q +P K++H ++ H V + R R
Sbjct: 178 RHWKKLELGKDDILRRRIGPRLQLVLPRKLHHLGYKELHEEMGHLGAERVLQLARDRFFW 237
Query: 296 KRINIRVEHVKHSKCRQDFLKRVKENER 379
R+ +EH S CR KR K +R
Sbjct: 238 PRMQQDIEHYVTSVCRCIKQKRPKHAQR 265
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/71 (21%), Positives = 35/71 (49%)
Frame = +2
Query: 296 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 475
+++ + K R + ++ + +RLL+++++ K L++ P P A + + E
Sbjct: 1536 RKLTVEQREPYRLKARDNRVRLKDQEKRLLRQSESEKKHAALEQPPTP--APQVETQPET 1593
Query: 476 PVLLAPIPYEF 508
P+ A P+ F
Sbjct: 1594 PIHQAASPFVF 1604
>SB_25040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 456
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 182 QKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEH 322
++G PH+ + G TGR A+ + +K + +++ +R NI + H
Sbjct: 108 KEGKPHENHSGLTGR-----RGAMRALASKDINAQLLKERFNINMPH 149
>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1984
Score = 28.3 bits (60), Expect = 4.4
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +2
Query: 122 RYMKVYKVG--DIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIP 295
R+ K ++G DI+ R +Q +P K++H ++ H V + R R
Sbjct: 1066 RHWKKLELGKDDILRRRIGPRLQLVLPRKLHHLVYKELHEEMGHLGAERVLQLARDRFFW 1125
Query: 296 KRINIRVEHVKHSKCRQDFLKRVKENER 379
R+ +EH S CR KR K +R
Sbjct: 1126 PRMQQDIEHYVTSVCRCIKQKRPKHAQR 1153
>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
Length = 1139
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 175 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQ 270
C+S + D+S VQ+DCS R DC +
Sbjct: 736 CNSSDIGSTPTILSDKSPVQQDCSSIRRDCSR 767
>SB_6077| Best HMM Match : EGF (HMM E-Value=0)
Length = 1165
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 17 CNTRLEDDELQGLPPRHQGTC 79
CNT + DE Q P +HQGTC
Sbjct: 174 CNTDI--DECQSSPCKHQGTC 192
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +1
Query: 160 HQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACSRKDYTEAHQYPC 315
H + WC++ + W + + C S C ACS+ T A Y C
Sbjct: 1804 HNKPWCATTDDFDRDRLWDNMKVDFKPCDASPCRGNGACSQ--VTPAFTYTC 1853
>SB_14940| Best HMM Match : fn2 (HMM E-Value=2.5e-08)
Length = 93
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +1
Query: 160 HQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACSRKDYTEAHQYPC 315
H + WC++ + W + + C S C ACS+ T A Y C
Sbjct: 30 HNKPWCATTDDFDRDRLWDNMKVDFKPCDASPCRGNGACSQ--VTPAFTYTC 79
>SB_12112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 102
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 94 RTHGTIPLSTXHESVQSWRHCR-HQR 168
R G IP+ H S +SWRH R HQR
Sbjct: 77 RARGVIPV---HVSARSWRHSRTHQR 99
>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 318 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLP 452
++S+ PS KT+ ++R RKP +PAR ST ++ P
Sbjct: 633 TLSAPPSRPKTAPTSAQRTPEPIRKPLVPARMSTDSTDAFKIQAP 677
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,335,319
Number of Sequences: 59808
Number of extensions: 366573
Number of successful extensions: 1161
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -