Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_B03
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   0.88 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   3.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   3.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   3.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   3.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 481  DGFLSSTDDVGSFRGSW 431
            DG  SS  D GS  GSW
Sbjct: 1064 DGITSSGSDSGSSNGSW 1080


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 157 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 255
           R Q+ + +   Y      WK+RSR + +   SR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 157 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 255
           R Q+ + +   Y      WK+RSR + +   SR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 157 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 255
           R Q+ + +   Y      WK+RSR + +   SR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 157 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 255
           R Q+ + +   Y      WK+RSR + +   SR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 166 RQWCSSKGYATQSIPWKDRSRV 231
           R  C   GY  +SI W+  +RV
Sbjct: 509 RVTCPVAGYPIESIVWERDTRV 530


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 75  VPWCRGGNPW 46
           +PW   GNPW
Sbjct: 134 LPWRTCGNPW 143


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 75  VPWCRGGNPW 46
           +PW   GNPW
Sbjct: 187 LPWRTCGNPW 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,238
Number of Sequences: 438
Number of extensions: 2934
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)