Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_B02
(347 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C) 60 3e-10
At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B) ribo... 60 3e-10
At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A) ribo... 60 3e-10
At4g21710.1 68417.m03144 DNA-directed RNA polymerase II 135 kDa ... 31 0.16
At4g13960.1 68417.m02159 F-box family protein contains F-box dom... 27 2.6
At5g47520.1 68418.m05867 Ras-related GTP-binding protein, putati... 27 4.5
At3g21450.1 68416.m02706 protein kinase family protein contains ... 26 6.0
At1g73360.1 68414.m08491 homeobox-leucine zipper family protein ... 26 6.0
At1g60380.1 68414.m06798 apical meristem formation protein-relat... 26 6.0
At5g38386.1 68418.m04638 F-box family protein contains F-box dom... 26 7.9
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui... 26 7.9
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 26 7.9
At1g67025.1 68414.m07621 hypothetical protein 26 7.9
At1g60370.1 68414.m06797 F-box family protein similar to hypothe... 26 7.9
>At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C)
Length = 56
Score = 60.5 bits (140), Expect = 3e-10
Identities = 25/34 (73%), Positives = 26/34 (76%)
Frame = +2
Query: 143 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 244
CR C N HGLIRKYGLN CRQCFR A +IGF K
Sbjct: 21 CRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54
Score = 39.5 bits (88), Expect = 6e-04
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +1
Query: 82 MGHANIWYSHPRRYGQGSR 138
MGH+N+W SHP++YG GSR
Sbjct: 1 MGHSNVWNSHPKKYGPGSR 19
>At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B)
ribosomal protein S29, rat, PIR:S30298
Length = 56
Score = 60.5 bits (140), Expect = 3e-10
Identities = 25/34 (73%), Positives = 26/34 (76%)
Frame = +2
Query: 143 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 244
CR C N HGLIRKYGLN CRQCFR A +IGF K
Sbjct: 21 CRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54
Score = 39.5 bits (88), Expect = 6e-04
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +1
Query: 82 MGHANIWYSHPRRYGQGSR 138
MGH+N+W SHP++YG GSR
Sbjct: 1 MGHSNVWNSHPKKYGPGSR 19
>At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A)
ribosomal protein S29, rat, PIR:S30298
Length = 56
Score = 60.5 bits (140), Expect = 3e-10
Identities = 25/34 (73%), Positives = 26/34 (76%)
Frame = +2
Query: 143 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 244
CR C N HGLIRKYGLN CRQCFR A +IGF K
Sbjct: 21 CRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54
Score = 39.5 bits (88), Expect = 6e-04
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +1
Query: 82 MGHANIWYSHPRRYGQGSR 138
MGH+N+W SHP++YG GSR
Sbjct: 1 MGHSNVWNSHPKKYGPGSR 19
>At4g21710.1 68417.m03144 DNA-directed RNA polymerase II 135 kDa
polypeptide / RNA polymerase II subunit 2 (RPB135) (RPB2)
(RP140) identical to SP|P38420 DNA-directed RNA
polymerase II 135 kDa polypeptide (EC 2.7.7.6) (RNA
polymerase II subunit 2) {Arabidopsis thaliana}
Length = 1188
Score = 31.5 bits (68), Expect = 0.16
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +2
Query: 92 QIFGILTLADTDKDLGSCRSCSNRHGLIRKYGLNICRQCFRE 217
++ G++ +A+ K+ CR C N+ +++ Y C+ F+E
Sbjct: 1125 EVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQE 1166
>At4g13960.1 68417.m02159 F-box family protein contains F-box domain
Pfam:PF00646
Length = 434
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 201 LHMFKPYLRIKPCLLEQDRHXPRSLSVSARVRIPNIC 91
+HM K ++ PCL+E + + S ++R+P +C
Sbjct: 367 MHMIKHFVNYFPCLMETNIYIEE--SGPPKLRVPQVC 401
>At5g47520.1 68418.m05867 Ras-related GTP-binding protein, putative
similar to GTP-binding protein RAB11J GI:1370160 from
[Lotus japonicus]
Length = 221
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 156 EQDRHXPRSLSVSARVRIPNICVAHFKKLNCC 61
E ++ P SLS +V IP+ FKK CC
Sbjct: 188 ELNKQDPASLSNGKKVVIPSDGQGEFKKGGCC 219
>At3g21450.1 68416.m02706 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 270
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 106 SHPRRYGQGSRXMPILLQQAWLNPQVRF 189
SH Y + MP+++++ W +PQ RF
Sbjct: 21 SHGTVYTGLIKDMPVVIKREWCSPQPRF 48
>At1g73360.1 68414.m08491 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein
protodermal factor2 (GI:14276060) [Arabidopsis
thaliana]; similar to homeobox protein GI:1173621 from [
Phalaenopsis sp.]
Length = 722
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/59 (23%), Positives = 24/59 (40%)
Frame = +3
Query: 81 NGPRKYLVFSPSQIRTRISXHADPAPTGMA*SASTV*TYADSASESMLMT*DSRSWTKW 257
N R +V +++ R++ H P P G A+T +S D R+ +W
Sbjct: 503 NNTRSTVVSELNEVGIRVTAHKSPEPNGTVLCAATTFWLPNSPQNVFNFLKDERTRPQW 561
>At1g60380.1 68414.m06798 apical meristem formation protein-related
contains similarity to CUC1 [Arabidopsis thaliana]
gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
gi|1279640|emb|CAA63101
Length = 318
Score = 26.2 bits (55), Expect = 6.0
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 203 VCICSNRTCGLSHAC 159
+CI +NRTCG++ C
Sbjct: 223 ICIFANRTCGVTDKC 237
>At5g38386.1 68418.m04638 F-box family protein contains F-box domain
Pfam:PF00646
Length = 403
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = -3
Query: 201 LHMFKPYLRIKPCLLEQDRHXPRSLSVSARVR-IPNI---CVAHFKKLNCC 61
+HM K +L PCL E + + + R IP + V H+ KL+ C
Sbjct: 345 MHMIKHFLDYLPCLKEMKISYMKKNDHTTQFRVIPQVIAEMVEHYNKLSNC 395
>At4g38600.2 68417.m05463 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1794
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 144 HXPRSLSVSARVRIPNICVAHFKKLNCCFANEQQN*RQH 28
H RSLS SAR+ +AH KL C A+ ++ R +
Sbjct: 829 HPSRSLSGSARLSSGLSALAHPLKLRLCRASGEKTLRDY 867
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12 (TRIP12)
{Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 144 HXPRSLSVSARVRIPNICVAHFKKLNCCFANEQQN*RQH 28
H RSLS SAR+ +AH KL C A+ ++ R +
Sbjct: 902 HPSRSLSGSARLSSGLSALAHPLKLRLCRASGEKTLRDY 940
>At1g67025.1 68414.m07621 hypothetical protein
Length = 221
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 128 KDLGSCRSCSNRHGLIRKYGLNICRQC 208
+D SCR CSN HG+ ++ QC
Sbjct: 179 RDDQSCRGCSNSHGVCGSEPVSGSFQC 205
>At1g60370.1 68414.m06797 F-box family protein similar to
hypothetical protein GI:9993352 from [Arabidopsis
thaliana]
Length = 283
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 104 ILTLADTDKDLGSCRSCSNRHGLIRKYGLNI 196
ILTL T+K LG CS H ++ G+ I
Sbjct: 178 ILTLGTTEKMLGRKIECSLTHNILSNEGVCI 208
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,591,234
Number of Sequences: 28952
Number of extensions: 100893
Number of successful extensions: 205
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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