Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_A24
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 105 4e-24
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 105 4e-24
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 105 4e-24
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 68 1e-12
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo... 27 1.8
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 27 1.8
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 27 1.8
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 7.2
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 25 9.5
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 105 bits (253), Expect = 4e-24
Identities = 53/56 (94%), Positives = 54/56 (96%)
Frame = +1
Query: 259 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLXFQSAAIGALQEASEAYL 426
TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL FQS+AIGALQEA EAYL
Sbjct: 46 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYL 101
Score = 93.1 bits (221), Expect = 3e-20
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = +3
Query: 123 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPG 257
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPG
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPG 45
Score = 65.3 bits (152), Expect = 7e-12
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = +2
Query: 410 QARLISXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 532
+A L+S LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 98 EAYLVS--LFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 105 bits (253), Expect = 4e-24
Identities = 53/56 (94%), Positives = 54/56 (96%)
Frame = +1
Query: 259 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLXFQSAAIGALQEASEAYL 426
TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL FQS+AIGALQEA EAYL
Sbjct: 46 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYL 101
Score = 93.1 bits (221), Expect = 3e-20
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = +3
Query: 123 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPG 257
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPG
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPG 45
Score = 65.3 bits (152), Expect = 7e-12
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = +2
Query: 410 QARLISXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 532
+A L+S LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 98 EAYLVS--LFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 105 bits (253), Expect = 4e-24
Identities = 53/56 (94%), Positives = 54/56 (96%)
Frame = +1
Query: 259 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLXFQSAAIGALQEASEAYL 426
TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL FQS+AIGALQEA EAYL
Sbjct: 46 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYL 101
Score = 93.1 bits (221), Expect = 3e-20
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = +3
Query: 123 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPG 257
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPG
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPG 45
Score = 65.3 bits (152), Expect = 7e-12
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = +2
Query: 410 QARLISXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 532
+A L+S LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 98 EAYLVS--LFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 68.1 bits (159), Expect = 1e-12
Identities = 37/65 (56%), Positives = 49/65 (75%), Gaps = 6/65 (9%)
Frame = +1
Query: 259 TVALREIRRYQKSTELLIRKLPFQRLVREIAQD----FKTD--LXFQSAAIGALQEASEA 420
T ALREIR+YQ+ST+LLI++LPF R+VREI+ + F TD L +QS A+ LQEA+EA
Sbjct: 26 TTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQEAAEA 85
Query: 421 YLXWL 435
+L L
Sbjct: 86 FLVHL 90
Score = 60.1 bits (139), Expect = 3e-10
Identities = 27/30 (90%), Positives = 29/30 (96%)
Frame = +2
Query: 434 LFEDTNLCAIHAKRVTIMPKDIQLARRIRG 523
LFEDTNLCAIHAKRVTIM +D+QLARRIRG
Sbjct: 90 LFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119
>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +3
Query: 372 AFPVCRHRSSPGGKRGLSRLACSKTPTCVLFTPNV*PSCRRIFNLLD 512
A VC + S K S L C C+ PN PS R + + +D
Sbjct: 293 ALAVCNAQYSFPRKHPYSTLLCEIVEACLQREPNKRPSARELLSKID 339
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 238 HIVIALXTVALREIRRYQKSTELLIRKLPFQR 333
H+ L A RE+++ ++ EL++ LPFQR
Sbjct: 331 HVWEKLEEEAPREVKQIEQPKELVLNLLPFQR 362
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -2
Query: 541 TNLSTFTTDSSSKLN---ILRHDGHTFGVNSTQVGVFEQAXRDKPRLPPGE 398
TNLS T + L+ L D F S Q+G F+ + ++ + PPG+
Sbjct: 44 TNLSLSNTKAPGSLDERLFLTEDDIIFHDRSIQLGYFDPSLSERKQSPPGK 94
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 408 LLESSDGGRLEXQISFEILSD 346
L + DGG+LE Q+ +++L D
Sbjct: 72 LFTTDDGGKLELQVYYQLLVD 92
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -2
Query: 514 SSSKLNILRHDGHTFGVNSTQVGVFEQAXRDKPRLPPGELRWRQTGXAN 368
++S +N + G ST+ G F++ D P +P +W+Q N
Sbjct: 31 TTSNVNNTQSTGRGSSGTSTEHGTFKKGRNDAPDVP----QWKQVNAKN 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,403
Number of Sequences: 5004
Number of extensions: 38382
Number of successful extensions: 112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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