Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_A23
(527 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220... 105 3e-23
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 28 4.0
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26... 28 5.3
11_01_0645 + 5185341-5185568,5185773-5185823 27 7.1
10_08_0669 + 19742140-19742189,19742886-19742923,19744260-197444... 27 7.1
06_03_0118 + 16836401-16837456,16837558-16837701,16837812-16838231 27 7.1
05_01_0089 + 589457-589506,589598-589741,589820-589903,590118-59... 27 7.1
10_08_0340 - 16934317-16934478,16934569-16934745,16934842-169349... 27 9.3
02_02_0146 - 7171656-7172044,7172383-7175008 27 9.3
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249... 27 9.3
>03_04_0129 +
17520753-17520842,17521651-17521741,17521887-17522070,
17522149-17522224
Length = 146
Score = 105 bits (251), Expect = 3e-23
Identities = 44/87 (50%), Positives = 64/87 (73%)
Frame = +3
Query: 189 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALK 368
W+Y R A+I R IY+R +GV KI+GGR+RNG P HFC+SSG+I+R LQ L+ +
Sbjct: 55 WYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMG 114
Query: 369 LVEKVQDGGRILTTQGRRDLDRIAAQV 449
+++ GGR++T+QGRRDLD++A +V
Sbjct: 115 IIDVDPKGGRLITSQGRRDLDQVAGRV 141
Score = 67.7 bits (158), Expect = 5e-12
Identities = 29/46 (63%), Positives = 38/46 (82%)
Frame = +2
Query: 47 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDP 184
TVKDV + VK +AHLK++GK+++PE +D+VKTARFKEL PYDP
Sbjct: 8 TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDP 53
>02_01_0385 +
2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 154 SCLYKIHVLRYLDFARFF*VS-SDSFNNLVLFNILYCDGTHL 32
S +YK+ +LRYLD + S S SFN+L+ L T+L
Sbjct: 550 SSVYKLKLLRYLDASSLRISSFSKSFNHLLNLQALILSNTYL 591
>08_01_0036 -
267236-268165,268255-268299,268485-268574,269485-269805,
269895-270098,271532-271664,271810-271881,273106-273168,
273252-275034,275169-275217
Length = 1229
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +1
Query: 181 PXIGSMCVVLPSFVIFTFAHLLE*RLSPRSLVGANVMELHLHISAGHQAVL 333
P +G++ + LP F+ + LSPR L+ A V EL L GH A L
Sbjct: 160 PELGNLVLALPGFLSLVAVRSIPQELSPR-LLWAPVFEL-LADHRGHPAFL 208
>11_01_0645 + 5185341-5185568,5185773-5185823
Length = 92
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 225 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK 341
++ +SP + + + GR+R G P R +G IA +
Sbjct: 18 VHCKSPAALLGIESPYSGRRRVGARPRGGSRQAGQIAER 56
>10_08_0669 +
19742140-19742189,19742886-19742923,19744260-19744448,
19746402-19748188
Length = 687
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = +3
Query: 303 SHFCRSSGSIARKALQSL-----EALKLVEKVQDGGRILTTQGRRDLDRIAAQVRL 455
SH C S S+ R+ LQS+ EA +L + ++ R Q + DLD +A ++ L
Sbjct: 193 SHPCFSKNSLCRELLQSVAATLAEAAELGARCREPPRAGKLQMQSDLDALAGKLDL 248
>06_03_0118 + 16836401-16837456,16837558-16837701,16837812-16838231
Length = 539
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +2
Query: 92 AHLKKTGKVKVPEHMDLVKTARFKELAPYD--PXLVLCALCCHPSSYLH-SLTCWSKDCH 262
AHLK TG+ P+ +D + + +V AL HP + +TC D H
Sbjct: 100 AHLKHTGRAPGPDELDRTGGLLLRAMDGMRDVARMVSSALAAHPGPFRSVHITCTPMDAH 159
Query: 263 Q 265
+
Sbjct: 160 R 160
>05_01_0089 +
589457-589506,589598-589741,589820-589903,590118-590261,
590351-590401,590492-590641,591175-591488,592685-592815,
593131-593451,594994-595057,595322-595443
Length = 524
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/54 (20%), Positives = 27/54 (50%)
Frame = +2
Query: 17 LPTQGKMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPY 178
+P+ ++ ++ V D +++ + + H K TG ++ E+ ++ L PY
Sbjct: 219 MPSASEVAALIVNDTSENQKGRDIIVHYKDTGPRRISENHPKFMAMQYPLLFPY 272
>10_08_0340 -
16934317-16934478,16934569-16934745,16934842-16934940,
16935025-16935225,16935389-16935409,16935554-16935661,
16935749-16936130,16936693-16936912,16938673-16938827,
16938960-16939183,16939648-16939707
Length = 602
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 123 YLSTWIL*RQLASKSWLRMTLXWFYVRCAAILRHI 227
Y+S W + R + SWL M L W Y + R++
Sbjct: 297 YVSRWYM-RMMWPLSWLSMVLTWTYGSSFTVERNV 330
>02_02_0146 - 7171656-7172044,7172383-7175008
Length = 1004
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 152 ARFKELAPYDPXLVLCALCCHPSSYLHSLTC-WSKDCHQD 268
A + LA D L +LCC S +H TC WS+ D
Sbjct: 586 AALQTLAYEDSFLDNPSLCCQSESGMHIRTCPWSQSMSHD 625
>01_06_1208 +
35424241-35424370,35424415-35424728,35424782-35424967,
35425361-35425523,35425601-35425787,35425875-35426016
Length = 373
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 393 HRPELSQQASMPPTIAKPCVQYCLMTCRN 307
H + + + P TIA+ +QYCL TC N
Sbjct: 116 HPTQDPEATNSPFTIAQLQLQYCLHTCTN 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,751,033
Number of Sequences: 37544
Number of extensions: 276373
Number of successful extensions: 712
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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