Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_A23
(527 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ... 101 3e-22
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi... 101 4e-22
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ... 98 3e-21
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063... 30 1.1
At4g16095.1 68417.m02440 disease resistance protein-related cont... 29 1.5
At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /... 28 4.5
At3g54950.1 68416.m06092 patatin-related low similarity to patat... 28 4.5
At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containi... 28 4.5
At5g16500.1 68418.m01928 protein kinase family protein contains ... 27 7.8
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ... 27 7.8
>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
RIBOSOMAL PROTEIN S19 - Oryza sativa,
SWISSPROT:RS19_ORYSA
Length = 143
Score = 101 bits (242), Expect = 3e-22
Identities = 43/87 (49%), Positives = 61/87 (70%)
Frame = +3
Query: 189 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALK 368
W+Y+R A++ R IY+R +GV +I+GG KRNG P HFC+SSG IAR LQ LE +
Sbjct: 53 WYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMS 112
Query: 369 LVEKVQDGGRILTTQGRRDLDRIAAQV 449
+VE GGR +T+ G+RDLD++A ++
Sbjct: 113 IVELDTKGGRRITSSGQRDLDQVAGRI 139
Score = 61.7 bits (143), Expect = 3e-10
Identities = 27/46 (58%), Positives = 34/46 (73%)
Frame = +2
Query: 47 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDP 184
TVKDV VK A+HLK++GK+++P D+VKT R KELAPYDP
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDP 51
>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
Length = 143
Score = 101 bits (241), Expect = 4e-22
Identities = 42/87 (48%), Positives = 61/87 (70%)
Frame = +3
Query: 189 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALK 368
W+Y+R A++ R +Y+R +GV +I+GG KRNG P HFC+SSG IAR LQ LE +
Sbjct: 53 WYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMN 112
Query: 369 LVEKVQDGGRILTTQGRRDLDRIAAQV 449
+VE GGR +T+ G+RDLD++A ++
Sbjct: 113 IVELDTKGGRRITSSGQRDLDQVAGRI 139
Score = 61.3 bits (142), Expect = 4e-10
Identities = 26/46 (56%), Positives = 34/46 (73%)
Frame = +2
Query: 47 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDP 184
TVKDV VK A+HLK++GK+++P D+VKT + KELAPYDP
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDP 51
>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
Length = 143
Score = 98.3 bits (234), Expect = 3e-21
Identities = 39/87 (44%), Positives = 61/87 (70%)
Frame = +3
Query: 189 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALK 368
W+Y+R A++ R +Y+R +GV +I+GG KRNG P HFC+SSG +AR LQ L+ +
Sbjct: 53 WYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMN 112
Query: 369 LVEKVQDGGRILTTQGRRDLDRIAAQV 449
+V+ GGR +T+ G+RDLD++A ++
Sbjct: 113 IVDLDTKGGRKITSSGQRDLDQVAGRI 139
Score = 62.5 bits (145), Expect = 2e-10
Identities = 27/46 (58%), Positives = 35/46 (76%)
Frame = +2
Query: 47 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDP 184
TVKDV + VK AAHLK++GK+++P D+VKT + KELAPYDP
Sbjct: 6 TVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDP 51
>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
Domain of unknown function (DUF383) and PF04064: Domain
of unknown function (DUF384)
Length = 339
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 309 FCRSSGSIARKALQSLEALKL-VEKVQDGGRILTTQGRRDLDRIAAQ 446
FCRSSG A + + ++ + + K +DG ++L RR L +I Q
Sbjct: 143 FCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQIIRQ 189
>At4g16095.1 68417.m02440 disease resistance protein-related
contains weak similarity to rpp8 [Arabidopsis thaliana]
gi|3901294|gb|AAC78631
Length = 187
Score = 29.5 bits (63), Expect = 1.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 393 HRPELSQQASMPPTIAKPCVQYCLM 319
H P L Q PP + C++YC M
Sbjct: 86 HMPRLPDQHRFPPNLTNICLRYCCM 110
>At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase PG1 [Glycine max]
GI:5669846; contains PF00295: Glycosyl hydrolases family
28
Length = 444
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 328 LPDDLQKCEGVTPLRLRPPKILVTVFTPTGE 236
L D C G+ PLR R KI +T F G+
Sbjct: 21 LGDSEATCSGIVPLRYRYDKISITDFGGVGD 51
>At3g54950.1 68416.m06092 patatin-related low similarity to patatin
[GI:169500][Solanum tuberosum]; contains Patatin domain
PF01734
Length = 488
Score = 27.9 bits (59), Expect = 4.5
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -3
Query: 228 KYDEGWQHNAHRTNXGSYG-ASSLKRAVFTRS-MCSGTLTLPVFFK*AATVLTI 73
K D+ WQ R G YG A LKR + T S CSGT L K + + LT+
Sbjct: 167 KADDTWQFLT-RNAKGLYGGAGILKRVLRTGSGCCSGTAKLKKVMKESFSELTL 219
>At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 633
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +3
Query: 246 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVE--KVQDGGRILTTQGR 419
G + ++F G R+G PSHF +S A + LE K V ++ G +++ G
Sbjct: 242 GTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN 301
Query: 420 RDLDRIA 440
LD A
Sbjct: 302 TLLDMYA 308
>At5g16500.1 68418.m01928 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 56 DVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELA 172
+VE D+ V A K+T + + E VKT F+ELA
Sbjct: 30 NVEHDEFRPPVVATTKRTEEREPAEQQPPVKTFNFRELA 68
>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1218
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -2
Query: 433 LSRSRLPCVVRMRXXXXXXXXXFNASNDCKALRAILPDDLQKCEGVTPLRLR 278
+S SRL C+ + + NA +D +DL+K G +PL L+
Sbjct: 178 ISSSRLDCLSKYQPRDDIVARNCNAGSDDTEEELSNSEDLRKVTGASPLLLK 229
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,942,247
Number of Sequences: 28952
Number of extensions: 216557
Number of successful extensions: 483
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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