Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_A17
(656 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 313 7e-86
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 210 6e-55
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 56 3e-08
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 31 0.83
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05) 29 4.4
SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088) 29 4.4
SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05) 29 4.4
SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0) 29 4.4
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05) 29 4.4
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 313 bits (769), Expect = 7e-86
Identities = 143/190 (75%), Positives = 163/190 (85%)
Frame = +3
Query: 87 FSFLTRRRGKALLNFAL*XYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKE 266
F+ T+ R K N + YAERHGYIKGVVK+IIHDPGRGAPLAVV FRDPY++K RKE
Sbjct: 16 FTSHTKHR-KGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKE 74
Query: 267 LFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFA 446
LF+A EG+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+A
Sbjct: 75 LFVATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYA 134
Query: 447 TVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRN 626
TVI HN + KRTRVKLPSG KKV+PSSNR +VGIVAGGGRIDKP+LKAGRAYHKYK KRN
Sbjct: 135 TVISHNVEKKRTRVKLPSGIKKVIPSSNRALVGIVAGGGRIDKPMLKAGRAYHKYKAKRN 194
Query: 627 CWPYVRGVAM 656
CWP VRGVAM
Sbjct: 195 CWPRVRGVAM 204
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = +2
Query: 65 QRKGAGSVFVSHTKKRKGAPKLR 133
QRKGAGS+F SHTK RKGA LR
Sbjct: 8 QRKGAGSIFTSHTKHRKGAANLR 30
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 210 bits (514), Expect = 6e-55
Identities = 93/123 (75%), Positives = 109/123 (88%)
Frame = +3
Query: 171 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVM 350
GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A EG+YTGQF+YCGKKA L++GN +
Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCL 60
Query: 351 PVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSN 530
PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSN
Sbjct: 61 PVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSN 120
Query: 531 RGM 539
R +
Sbjct: 121 RAL 123
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 56.0 bits (129), Expect = 3e-08
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 5/149 (3%)
Frame = +3
Query: 165 IKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYC--GKK---AT 329
IK V + +DP R A +A+V +++L IAP+ + G + GK A
Sbjct: 56 IKDKVLQVGYDPCRSARIALVAGNG----SNQEKLVIAPDEIQVGDVMTASRGKPESLAL 111
Query: 330 LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 509
L+ G+ P+ +P GT+V N+E G +LARA+G A +I + V+LPS +
Sbjct: 112 LKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSKVE 169
Query: 510 KVLPSSNRGMVGIVAGGGRIDKPILKAGR 596
K + S VG V+ R ++ I KAGR
Sbjct: 170 KEVSSKCLASVGRVSNIERKNRVIGKAGR 198
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 31.1 bits (67), Expect = 0.83
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 559 PPATIPTMPLLLDGRTFLAPDGSFT 485
P AT + L+LD TFL PDGS T
Sbjct: 135 PAATTTYLNLILDSETFLEPDGSAT 159
>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -1
Query: 479 TLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNG--TLRHSSNRHHISNFKSCFLSTIN 306
T SI ++ + + + GTC+ + FK+ H + H + H ++N C + ++
Sbjct: 76 THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135
Query: 305 KLACVEPFGSNEELLP 258
CV F +++ P
Sbjct: 136 NQRCVS-FNLKKQITP 150
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 420 LARASGNF--ATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGI 548
+AR +G+F T + D RTR P KKVL ++N G + I
Sbjct: 1469 IARRTGSFDNLTSMLRLQDTPRTRTLAPISVKKVLTATNPGQLAI 1513
>SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05)
Length = 275
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -1
Query: 623 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 498
T DL+L P N VNTST+S +DH +V NL SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229
>SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088)
Length = 321
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -1
Query: 623 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 498
T DL+L P N VNTST+S +DH +V NL SR
Sbjct: 144 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 181
>SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05)
Length = 249
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -1
Query: 623 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 498
T DL+L P N VNTST+S +DH +V NL SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229
>SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 801
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -1
Query: 623 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 498
T DL+L P N VNTST+S +DH +V NL SR
Sbjct: 86 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 123
>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = -2
Query: 400 FSSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TNWPV*SPSGAMKSSFLVLNLYGSRKCTT 221
F+S L T +P+ P G+TF T +V F +NW + + SG + + ++ + S +
Sbjct: 1067 FNSELVTSLPT---PPGLTFTTYKVVFLE--SNWRIGNTSGRVATDKELVRVLSSLEYLW 1121
Query: 220 AKG 212
+G
Sbjct: 1122 IRG 1124
>SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05)
Length = 273
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -1
Query: 623 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 498
T DL+L P N VNTST+S +DH +V NL SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,159,073
Number of Sequences: 59808
Number of extensions: 492096
Number of successful extensions: 1231
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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