Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_A17
(656 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 270 5e-73
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 270 7e-73
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 269 1e-72
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 57 9e-09
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 57 9e-09
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 32 0.29
At3g27500.1 68416.m03438 DC1 domain-containing protein contains ... 32 0.29
At4g00450.1 68417.m00062 expressed protein 30 1.6
At5g20860.1 68418.m02477 pectinesterase family protein contains ... 29 3.6
At3g12000.1 68416.m01486 S-locus related protein SLR1, putative ... 29 3.6
At5g65290.1 68418.m08212 LMBR1 integral membrane family protein ... 28 4.8
At4g33410.1 68417.m04748 signal peptide peptidase family protein... 27 8.3
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 27 8.3
At2g22730.1 68415.m02694 transporter-related low similarity to s... 27 8.3
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 270 bits (662), Expect = 5e-73
Identities = 120/184 (65%), Positives = 150/184 (81%)
Frame = +3
Query: 105 RRGKALLNFAL*XYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 284
R+G A F Y ER+GY+KG+V +IIHDPGRGAPLA V FR P+++ +KELF+A E
Sbjct: 24 RKGPA--KFRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAFRHPFRYMKQKELFVAAE 81
Query: 285 GLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHN 464
G+YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E +GDRG LARASG++A VI HN
Sbjct: 82 GMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHN 141
Query: 465 PDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVR 644
P++ TRVKLPSG+KK+LPS+ R M+G VAGGGR +KP LKAG AYHKYK KRNCWP VR
Sbjct: 142 PESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVR 201
Query: 645 GVAM 656
GVAM
Sbjct: 202 GVAM 205
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/27 (74%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2
Query: 62 AQRKGA-GSVFVSHTKKRKGAPKLRSL 139
AQRKGA GSVF SHT RKG K RSL
Sbjct: 7 AQRKGAAGSVFKSHTHHRKGPAKFRSL 33
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 270 bits (661), Expect = 7e-73
Identities = 122/184 (66%), Positives = 151/184 (82%)
Frame = +3
Query: 105 RRGKALLNFAL*XYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 284
R+G A F + ER+GY+KGVV +IIHDPGRGAPLA V FR P++FK +KELF+A E
Sbjct: 23 RKGPA--KFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTFRHPFRFKKQKELFVAAE 80
Query: 285 GLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHN 464
G+YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E +GDRG LARASG++A VI HN
Sbjct: 81 GMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHN 140
Query: 465 PDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVR 644
PD+ TR+KLPSG+KK++PS R M+G VAGGGR +KP+LKAG AYHKY+VKRN WP VR
Sbjct: 141 PDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVR 200
Query: 645 GVAM 656
GVAM
Sbjct: 201 GVAM 204
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/26 (76%), Positives = 20/26 (76%)
Frame = +2
Query: 62 AQRKGAGSVFVSHTKKRKGAPKLRSL 139
AQRKGAGSVF SHT RKG K RSL
Sbjct: 7 AQRKGAGSVFKSHTHHRKGPAKFRSL 32
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 269 bits (659), Expect = 1e-72
Identities = 120/184 (65%), Positives = 150/184 (81%)
Frame = +3
Query: 105 RRGKALLNFAL*XYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 284
R+G A F + ER+GY+KGVV +IIHDPGRGAPLA V FR P++FK +KELF+A E
Sbjct: 23 RKGPA--KFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVAFRHPFRFKKQKELFVAAE 80
Query: 285 GLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHN 464
G+YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E +GDRG ARASG++A VI HN
Sbjct: 81 GMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHN 140
Query: 465 PDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVR 644
PD +R+KLPSG+KK++PS R M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP VR
Sbjct: 141 PDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVR 200
Query: 645 GVAM 656
GVAM
Sbjct: 201 GVAM 204
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/26 (76%), Positives = 20/26 (76%)
Frame = +2
Query: 62 AQRKGAGSVFVSHTKKRKGAPKLRSL 139
AQRKGAGSVF SHT RKG K RSL
Sbjct: 7 AQRKGAGSVFKSHTHHRKGPAKFRSL 32
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 57.2 bits (132), Expect = 9e-09
Identities = 37/107 (34%), Positives = 58/107 (54%)
Frame = +3
Query: 336 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 515
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 516 LPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAM 656
+ + R +G V+ K + KAG++ ++ R P VRGVAM
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAM 159
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 57.2 bits (132), Expect = 9e-09
Identities = 37/107 (34%), Positives = 58/107 (54%)
Frame = +3
Query: 336 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 515
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 516 LPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAM 656
+ + R +G V+ K + KAG++ ++ R P VRGVAM
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAM 159
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 32.3 bits (70), Expect = 0.29
Identities = 22/57 (38%), Positives = 29/57 (50%)
Frame = +3
Query: 486 VKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAM 656
+ LP +KK + S R M+G +A G + K K +KRN W VRGVAM
Sbjct: 382 INLPLDSKKTVLSGCRVMIGQIASSG-----LTK------KLMIKRNMWAKVRGVAM 427
>At3g27500.1 68416.m03438 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 609
Score = 32.3 bits (70), Expect = 0.29
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 395 FKIAHNGTLRHSSNRH-HISNFKSCFLSTINKLACVEPFGSNEELLPCLELVWI 237
FK + T+ H S+RH H+S K S+ K AC P GS+ L C E +I
Sbjct: 363 FKRNDDNTIDHFSHRHNHMSLDKGGEESSFCK-ACAHPIGSSSSLYKCSECSFI 415
>At4g00450.1 68417.m00062 expressed protein
Length = 2124
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -1
Query: 407 THFLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKLACV-EPFGSNEELLPCLELVWIAE 231
TH+L K+ GT++ S + ++ + + C+ + G+ +E P L ++
Sbjct: 1149 THYLKKLIGTGTMKASLAEKNDDGYQVAQQIVVGLMDCIRQTGGAAQEGDPSLVSSAVSA 1208
Query: 230 VYNSQRCTSTRVMDYILNN 174
+ NS + R+ D+ L N
Sbjct: 1209 IINSVGLSVARITDFSLGN 1227
>At5g20860.1 68418.m02477 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 512
Score = 28.7 bits (61), Expect = 3.6
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Frame = +3
Query: 342 NVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP----SGAK 509
+++ G + + ++ +KM RL S I NP K LP +G +
Sbjct: 160 SILDSGGSSSASAISHISQKMDHLSRLVSNSLTLVDTIMKNPKPKTKSTALPRWVTAGER 219
Query: 510 KVLPSSNRGMVGIVAGGGRIDKPILKAGRAYH 605
++L R V + G + +++A A H
Sbjct: 220 RLLVGRARAHVVVAKDGSGDYRTVMEAVTAAH 251
>At3g12000.1 68416.m01486 S-locus related protein SLR1, putative
(S1) identical to S-locus related protein SLR1 homolog
(AtS1) GI:246209 Arabidopsis thaliana]; contains Pfam
profiles PF01453: Lectin (probable mannose binding),
PF00954: S-locus glycoprotein family
Length = 439
Score = 28.7 bits (61), Expect = 3.6
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = -1
Query: 605 VVCPSS-FQNRFVNTSTSSNNTDHASVA*WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRG 429
+V P + F+ F T+TSS N DH + W + R ++ V+N +S+
Sbjct: 49 IVSPGNIFELGFFKTTTSSRNGDHWYLGIWYKSISERTYVW--------VANRDNPLSK- 99
Query: 428 TCQTTSITHF-LFKIAHNGTLRHSSN 354
+ T I++ L + H+GTL S+N
Sbjct: 100 SIGTLKISYANLVLLDHSGTLVWSTN 125
>At5g65290.1 68418.m08212 LMBR1 integral membrane family protein
contains Pfam PF04791: LMBR1-like conserved region
Length = 733
Score = 28.3 bits (60), Expect = 4.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 554 WRWTY*QTYFESWKGIPQVQG 616
W W+Y T+ +W +P +QG
Sbjct: 74 WSWSYWSTFLLTWAVVPLIQG 94
>At4g33410.1 68417.m04748 signal peptide peptidase family protein
contains Pfam domain PF04258: Membrane protein of
unknown function (DUF435)
Length = 372
Score = 27.5 bits (58), Expect = 8.3
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 610 YLWYALPAFKIGL 572
Y+WYALP + IGL
Sbjct: 301 YIWYALPGYAIGL 313
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 446 GEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHHISNF 333
G+V GTC +A +G +R N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154
>At2g22730.1 68415.m02694 transporter-related low similarity to
spinster membrane proteins from [Drosophila
melanogaster] GI:12003974, GI:12003976, GI:12003972,
GI:12003970; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 510
Score = 27.5 bits (58), Expect = 8.3
Identities = 24/79 (30%), Positives = 31/79 (39%)
Frame = -2
Query: 553 ATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRLHTMV 374
ATIP LL G TFL FT L S I + E +P+ LH +
Sbjct: 361 ATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIALFALGELLVFATQAPVNYVCLHCVK 420
Query: 373 PSGIAPTGITFPTSRVAFF 317
PS + P + T + F
Sbjct: 421 PS-LRPLSMAISTVAIHIF 438
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,244,466
Number of Sequences: 28952
Number of extensions: 335399
Number of successful extensions: 907
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -