Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_A16
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42989| Best HMM Match : HdeA (HMM E-Value=9.6) 32 0.47
SB_43456| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_26573| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05) 29 4.4
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 29 4.4
SB_8844| Best HMM Match : WD40 (HMM E-Value=2.5e-28) 28 5.8
SB_59294| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.20004e-41) 28 5.8
SB_48894| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_2798| Best HMM Match : DNA_pol_B_2 (HMM E-Value=7.9e-10) 28 5.8
SB_36951| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_8375| Best HMM Match : NUC153 (HMM E-Value=2.9) 28 7.6
SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_42989| Best HMM Match : HdeA (HMM E-Value=9.6)
Length = 235
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +2
Query: 134 PVYTIRNVDNVPVYSLAFSFLPGGLERLLAGSKNGYVYAYNLQTNRVQQKIQVGQAPILH 313
PVY + N+++VP + S PG L LL S + YN Q ++ ++ + V A ++
Sbjct: 31 PVYEVNNIESVPFPGIISS--PGDLFPLLPDSIR---FIYNAQISKCEEHLSVKLAHLMS 85
Query: 314 LI 319
L+
Sbjct: 86 LV 87
>SB_43456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 31.5 bits (68), Expect = 0.62
Identities = 19/72 (26%), Positives = 38/72 (52%)
Frame = +2
Query: 200 GGLERLLAGSKNGYVYAYNLQTNRVQQKIQVGQAPILHLIHTDSHLITQEKGGKLKVFEL 379
G +RLL+GS + V Y+LQ +V + +PIL L +D ++++++ L ++
Sbjct: 242 GAYKRLLSGSIDRNVKVYDLQDYKVVHSMDY-PSPILSLAVSDDVVVSEKRKTYLNKYDK 300
Query: 380 TNSGYEEDAVIE 415
+E A ++
Sbjct: 301 LVKNFEYAAALD 312
>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2653
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 344 QEKGGKLKVFELTNSGYEEDAVIEVDYPGFCRFEANTKLASL-YVPEKDYKINIYNFNGE 520
QE+GG+L + L +S ++DY RF TKLA+ Y+PE K+ I NF
Sbjct: 1793 QEQGGRLLI-RLGDS--------DIDYDKNFRFYMTTKLANPHYLPEVCIKVTIINFTVT 1843
Query: 521 KLG 529
K G
Sbjct: 1844 KSG 1846
>SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1046
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = +2
Query: 194 LPGGLERLLAGSKNGYVYAYNLQTNRVQQKIQVGQAPILHLIHTDSHLITQE--KGGKLK 367
L GG+ +++G K GYVY + + Q + + HT H IT++ + ++
Sbjct: 273 LLGGMCVMVSGPKEGYVYDIYNKAMLLSQYKYTSDTIKVSVCHTLLHAITKQGLETYTVR 332
Query: 368 VFELTNSGYEEDAVIEVDYPGFCRFEANTKLAS 466
++ + G D V++ + + +K+AS
Sbjct: 333 MYAAASQGLRTDRVLQHNLSSMQNEKKESKIAS 365
>SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 600 HGNSMNFRHITSPSFTDASSYSKEPSFSPLKL 505
+G S++F TSP + D ++ +EPS +P L
Sbjct: 112 YGGSISFEDETSPRYYDNNNTYEEPSLTPAAL 143
>SB_26573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = -3
Query: 630 RNQLVXQGLSHGNSMNFRHITSPSF-TDASSYSKEPSFSP-LKL*MFIL*SFSGT*SDAS 457
RN+ + QG+S G+ N H + SF + A++ +++ F P +K+ IL S G D
Sbjct: 23 RNKDLGQGVSLGDDYNIAHWVNHSFYSSANAKTQQDEFVPRIKVPDVILNSIGGDVQDNP 82
Query: 456 F 454
F
Sbjct: 83 F 83
>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
Length = 1023
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = -3
Query: 630 RNQLVXQGLSHGNSMNFRHITSPSF-TDASSYSKEPSFSP-LKL*MFIL*SFSGT*SDAS 457
RN+ + QG+S G+ N H + SF + A++ +++ F P +K+ IL S G D
Sbjct: 153 RNKDLGQGVSLGDDYNIAHWVNHSFYSSANAKTQQDEFVPRIKVPDVILNSIGGDVQDNP 212
Query: 456 F 454
F
Sbjct: 213 F 213
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 600 HGNSMNFRHITSPSFTDASSYSKEPSFSPLKL 505
+G S++F TSP + D ++ +EPS +P L
Sbjct: 1693 YGGSISFEDETSPRYYDNNNTYEEPSLTPAAL 1724
>SB_8844| Best HMM Match : WD40 (HMM E-Value=2.5e-28)
Length = 539
Score = 28.3 bits (60), Expect = 5.8
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = +2
Query: 290 VGQAPILHLIHT-DSHLITQEKGGKLKVFEL-TNSGYEEDAVIEVDYPGFCRFEANTKLA 463
VG +H + T +HLI+ ++G LKV+++ T Y E + C +T L
Sbjct: 92 VGHDKDVHCLLTFGAHLISVDEGSSLKVWDIKTTELYLEVGFDSKTFHITCLMHPSTYLN 151
Query: 464 SLYVPEKDYKINIYNFNGEKLGSLEYDDASVKL 562
+ + K + I+N +YD+A+V +
Sbjct: 152 KILLCSKQGSMQIWNI------KTKYDNATVNV 178
>SB_59294| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.20004e-41)
Length = 851
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 467 LYVPE-KDYKINIYNFNGEKLGSLEYDDASVKLGDVMCLKFIEFPCDRPXSTSWL 628
++V E KD + ++ F E L S Y D ++ ++CL +I DR + +WL
Sbjct: 624 MFVDEFKDAEFHLRRFESEPLPSQTYKDFLLQFQKMVCLDYIIRNTDR-GNDNWL 677
>SB_48894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 120 ASSGILFTLSEMSIMCQFIHWLSVFYP 200
ASSG+ S++ I CQ + WL YP
Sbjct: 44 ASSGVSSRASDIHIGCQIVWWLDDRYP 70
>SB_2798| Best HMM Match : DNA_pol_B_2 (HMM E-Value=7.9e-10)
Length = 1378
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/52 (25%), Positives = 19/52 (36%)
Frame = +1
Query: 109 KMALLPPXSCLHYPKCR*CASLFTGFQFFTRGLREVTSRFEKRLCLRIQPPD 264
K + P C Y KC C G+ V ++ +C + PPD
Sbjct: 465 KKNVTPRSYCQMYHKCEACGKRIDMVAIQKEGVSHVCGEYKCTVCKEVVPPD 516
>SB_36951| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +2
Query: 329 SHLITQEKGGKLKVFELTNSGYEEDAV 409
+HLI QE+ L++ EL ++ Y++DA+
Sbjct: 12 AHLIKQEEKVNLELRELQHTAYDDDAI 38
>SB_8375| Best HMM Match : NUC153 (HMM E-Value=2.9)
Length = 433
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 287 VSSAELYLSGGCMRKHNRFSNRLVTSLSPRVKN*KPVNKLAHYRH 153
++S +L GC N+F N L TS+ + K +NKL ++H
Sbjct: 89 MASINTHLDSGC----NKFGNELNTSIKSGIGVEKRINKLDVHKH 129
>SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1388
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/52 (25%), Positives = 18/52 (34%)
Frame = +1
Query: 109 KMALLPPXSCLHYPKCR*CASLFTGFQFFTRGLREVTSRFEKRLCLRIQPPD 264
K + P C Y KC C G V ++ +C + PPD
Sbjct: 475 KKNVTPRSYCQMYHKCETCGKRIDMIAIQKEGTSHVCGEYKCTVCKEVVPPD 526
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,058,569
Number of Sequences: 59808
Number of extensions: 341394
Number of successful extensions: 748
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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