Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_A16
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15280.1 68418.m01790 pentatricopeptide (PPR) repeat-containi... 34 0.072
At5g10470.1 68418.m01213 kinesin motor protein-related TH65 prot... 33 0.22
At1g51690.2 68414.m05825 serine/threonine protein phosphatase 2A... 31 0.88
At1g51690.1 68414.m05824 serine/threonine protein phosphatase 2A... 31 0.88
At1g32160.1 68414.m03956 expressed protein 29 2.0
At1g17720.2 68414.m02194 serine/threonine protein phosphatase 2A... 29 2.7
At1g17720.1 68414.m02193 serine/threonine protein phosphatase 2A... 29 2.7
At5g65460.1 68418.m08232 kinesin motor protein-related contains ... 28 4.7
At3g51050.1 68416.m05590 FG-GAP repeat-containing protein 28 6.2
At3g01760.1 68416.m00114 lysine and histidine specific transport... 28 6.2
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 28 6.2
At5g45770.1 68418.m05627 leucine-rich repeat family protein cont... 27 8.2
At1g31470.1 68414.m03853 nodulin-related weak similarity to nodu... 27 8.2
>At5g15280.1 68418.m01790 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1227
Score = 34.3 bits (75), Expect = 0.072
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +2
Query: 374 ELTNSGYEEDAVIEVDYPGFCRFEANTKLASLYVPE---KDYKINIYNFN 514
EL + G+++D V G+C +E + K A LY+ E K YK ++Y++N
Sbjct: 348 ELEHLGFKQDEVTFGILIGWCCYEGDIKRAVLYLSEIMSKGYKPDVYSYN 397
>At5g10470.1 68418.m01213 kinesin motor protein-related TH65
protein, Arabidopsis thaliana, EMBL:AJ001729; contains
Pfam profile PF00225: Kinesin motor domain
Length = 1273
Score = 32.7 bits (71), Expect = 0.22
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +2
Query: 260 QTNRVQQKIQVGQAPILHLIHTDSHLITQ--EKGGKLKVFELTNSGYEEDAVIEVDYPGF 433
++ ++ Q + +A I LI+ L G +KVF +E++ +++PG
Sbjct: 107 KSRKLDQFVLETEARISPLINEKKRLFNDLLTAKGNIKVFCRARPLFEDEGPSVIEFPGD 166
Query: 434 CRFEANTKLASLYVPEKDYKIN 499
C NT +L P+KD++ +
Sbjct: 167 CTICVNTSDDTLSNPKKDFEFD 188
>At1g51690.2 68414.m05825 serine/threonine protein phosphatase 2A
(PP2A) 55 kDa regulatory subunit B identical to 55 kDa B
regulatory subunit of phosphatase 2A (GI:710330)
[Arabidopsis thaliana]; similar to type 2A protein
serine/threonine phosphatase 55 kDa B regulatory
GI:1408460 [Arabidopsis thaliana]; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies, 3 weak)
Length = 512
Score = 30.7 bits (66), Expect = 0.88
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +2
Query: 287 QVGQAPILHLIHTDS---HLITQEKGGKLKVFELT---NSGYEEDAVIEVDYP-GFCRFE 445
+V + I+ I D+ HL T ++GG++ +FE T NS + E DYP F
Sbjct: 34 EVQEVDIISAIEFDNSGNHLATGDRGGRVVLFERTDTNNSSGTRRELEEADYPLRHPEFR 93
Query: 446 ANTKLASLYVPEKDY 490
T+ S + PE DY
Sbjct: 94 YKTEFQS-HDPEFDY 107
>At1g51690.1 68414.m05824 serine/threonine protein phosphatase 2A
(PP2A) 55 kDa regulatory subunit B identical to 55 kDa B
regulatory subunit of phosphatase 2A (GI:710330)
[Arabidopsis thaliana]; similar to type 2A protein
serine/threonine phosphatase 55 kDa B regulatory
GI:1408460 [Arabidopsis thaliana]; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies, 3 weak)
Length = 513
Score = 30.7 bits (66), Expect = 0.88
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +2
Query: 287 QVGQAPILHLIHTDS---HLITQEKGGKLKVFELT---NSGYEEDAVIEVDYP-GFCRFE 445
+V + I+ I D+ HL T ++GG++ +FE T NS + E DYP F
Sbjct: 34 EVQEVDIISAIEFDNSGNHLATGDRGGRVVLFERTDTNNSSGTRRELEEADYPLRHPEFR 93
Query: 446 ANTKLASLYVPEKDY 490
T+ S + PE DY
Sbjct: 94 YKTEFQS-HDPEFDY 107
>At1g32160.1 68414.m03956 expressed protein
Length = 406
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 609 GLSHGNSMNFRHITSPSFTDASSYSKEPSFSPLKL*MFIL 490
G SHG + F H S SF+ S S PS P + F +
Sbjct: 5 GSSHGRRLCFNHYLSDSFSKFLSPSSSPSLLPQRCHSFCI 44
>At1g17720.2 68414.m02194 serine/threonine protein phosphatase 2A
(PP2A) 55 kDa regulatory subunit B identical to type 2A
protein serine/threonine phosphatase 55 kDa B regulatory
subunit (GI:1408460) [Arabidopsis thaliana]; similar to
55 kDa B regulatory subunit of phosphatase 2A GI:710330;
contains Pfam PF00400: WD domain, G-beta repeat (5
copies, 3 weak)
Length = 500
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +2
Query: 287 QVGQAPILHLIHTDS---HLITQEKGGKLKVFELTNS---GYEEDAVIEVDYP-GFCRFE 445
+V + I+ I D HL T ++GG++ +FE T++ G + + DYP F
Sbjct: 32 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSRKDLEQTDYPVRHPEFR 91
Query: 446 ANTKLASLYVPEKDY 490
T+ S + PE DY
Sbjct: 92 YKTEFQS-HEPEFDY 105
>At1g17720.1 68414.m02193 serine/threonine protein phosphatase 2A
(PP2A) 55 kDa regulatory subunit B identical to type 2A
protein serine/threonine phosphatase 55 kDa B regulatory
subunit (GI:1408460) [Arabidopsis thaliana]; similar to
55 kDa B regulatory subunit of phosphatase 2A GI:710330;
contains Pfam PF00400: WD domain, G-beta repeat (5
copies, 3 weak)
Length = 501
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +2
Query: 287 QVGQAPILHLIHTDS---HLITQEKGGKLKVFELTNS---GYEEDAVIEVDYP-GFCRFE 445
+V + I+ I D HL T ++GG++ +FE T++ G + + DYP F
Sbjct: 32 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSRKDLEQTDYPVRHPEFR 91
Query: 446 ANTKLASLYVPEKDY 490
T+ S + PE DY
Sbjct: 92 YKTEFQS-HEPEFDY 105
>At5g65460.1 68418.m08232 kinesin motor protein-related contains
similarity to kinesin heavy chain
Length = 1281
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +2
Query: 356 GKLKVFELTNSGYEEDAVIEVDYPGFCRFEANTKLASLYVPEKDYKIN 499
G +KVF +E++ +++P C NT +L P+K+++ +
Sbjct: 137 GNVKVFCRARPLFEDEGPSIIEFPDNCTIRVNTSDDTLSNPKKEFEFD 184
>At3g51050.1 68416.m05590 FG-GAP repeat-containing protein
Length = 698
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 443 EANTKLASLYVPEKDYKINIYNFNGEKLGSLE 538
EA+T AS +P+ +YK++++ N G E
Sbjct: 260 EAHTSDASQLIPQHNYKLDVHALNSRHPGEFE 291
>At3g01760.1 68416.m00114 lysine and histidine specific transporter,
putative similar to lysine and histidine specific
transporter [Arabidopsis thaliana] GI:2576361; contains
Pfam profile PF01490: Transmembrane amino acid
transporter protein
Length = 479
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 78 SDTSFGLSLSKNGTASSGILFTLSEMSIMCQFIHWLSVFYPGA*RG 215
+ + F LSL KN + SG+ + MS+ I W++ GA G
Sbjct: 191 ASSQFVLSLLKNFNSISGVSLVAAVMSVSYSTIAWVASLRKGATTG 236
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 260 GGCMRKHNRFSNRLVTSLSPRVKN*KPVNKLAHYR 156
GG RF + V S + RV++ + VN++AH R
Sbjct: 43 GGASLPRTRFQSSYVGSFARRVRDREEVNEVAHLR 77
>At5g45770.1 68418.m05627 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611
Length = 425
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 627 NQLVXQGLSHGNSMNFRHITSPSFTDASSYSKEPS 523
NQ ++ ++ +RHITS SFT+ SS PS
Sbjct: 54 NQSSSSSITCDDASPYRHITSISFTNCSSTLSLPS 88
>At1g31470.1 68414.m03853 nodulin-related weak similarity to
nodule-specific protein Nlj70 [Lotus japonicus]
GI:3329366
Length = 546
Score = 27.5 bits (58), Expect = 8.2
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Frame = -2
Query: 424 IIYFNYGIFFITTIR*FEN---LKLSTFLLGYKVAVSVYKMK----NRSLTNLYLLLNSI 266
I +FN F I IR F N L LS + ++ ++Y + N S +NLYLLLNS+
Sbjct: 115 ICWFNTACF-ILCIRHFPNNRALALSLTVSFNGISAALYSLAFNAINPSSSNLYLLLNSL 173
Query: 265 CLEVV 251
VV
Sbjct: 174 VPLVV 178
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,817,140
Number of Sequences: 28952
Number of extensions: 252303
Number of successful extensions: 682
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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