Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_A15
(409 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024776-21|AAK68479.1| 65|Caenorhabditis elegans Ribosomal pr... 81 4e-16
AL110477-7|CAB54332.1| 158|Caenorhabditis elegans Hypothetical ... 31 0.32
AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical ... 30 0.74
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 28 3.0
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 3.0
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 3.0
Z81116-3|CAB03303.1| 346|Caenorhabditis elegans Hypothetical pr... 27 6.9
U28929-1|AAN63410.1| 418|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z81513-6|CAB04176.1| 341|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z78546-7|CAB01772.1| 375|Caenorhabditis elegans Hypothetical pr... 26 9.1
U41991-9|AAA83349.1| 297|Caenorhabditis elegans Hypothetical pr... 26 9.1
AL023830-4|CAA19474.1| 375|Caenorhabditis elegans Hypothetical ... 26 9.1
>AC024776-21|AAK68479.1| 65|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 28 protein.
Length = 65
Score = 80.6 bits (190), Expect = 4e-16
Identities = 41/54 (75%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
Frame = +2
Query: 71 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIG-ETSRQIIRNVKGPVRDGDILT 229
MDK LARV KV+GRTGSQGQCTQV+VEFI + +R IIRNVKGPVR+GDILT
Sbjct: 1 MDKLT-LARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53
>AL110477-7|CAB54332.1| 158|Caenorhabditis elegans Hypothetical
protein Y113G7B.11 protein.
Length = 158
Score = 31.1 bits (67), Expect = 0.32
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +1
Query: 1 CFSKHASFGCTC---AYCIKLDITSQNG*TQRSC 93
C S H+ + C +YC+ ITS+NG QRSC
Sbjct: 27 CLSGHSQYATQCTSQSYCVS--ITSKNGPVQRSC 58
>AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical
protein F52C6.3 protein.
Length = 197
Score = 29.9 bits (64), Expect = 0.74
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 171 PAVRSSET*KDPSVTETSSLFLNLNVKLGGCDRLLQHYCIRL 296
P S E +DP E+S + NLNVK+ + L H IR+
Sbjct: 64 PLRESEEVTEDPISVESSEVIGNLNVKVAETQQELHHEGIRI 105
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 143 EYTGPENQYGQALSRHEQERWVYP 72
E TGPE+Q LS++E+ WVYP
Sbjct: 8246 EPTGPEDQ---KLSKNEKGEWVYP 8266
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 143 EYTGPENQYGQALSRHEQERWVYP 72
E TGPE+Q LS++E+ WVYP
Sbjct: 9290 EPTGPEDQ---KLSKNEKGEWVYP 9310
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 143 EYTGPENQYGQALSRHEQERWVYP 72
E TGPE+Q LS++++ WVYP
Sbjct: 6753 EPTGPEDQ---KLSKNKKGEWVYP 6773
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 143 EYTGPENQYGQALSRHEQERWVYP 72
E TGPE+Q LS++++ WVYP
Sbjct: 7472 EPTGPEDQ---KLSKNKKGEWVYP 7492
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 143 EYTGPENQYGQALSRHEQERWVYP 72
E TGPE+Q LS++++ WVYP
Sbjct: 10009 EPTGPEDQ---KLSKNKKGEWVYP 10029
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 143 EYTGPENQYGQALSRHEQERWVYP 72
E TGPE+Q LS++E+ WVYP
Sbjct: 8291 EPTGPEDQ---KLSKNEKGEWVYP 8311
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 143 EYTGPENQYGQALSRHEQERWVYP 72
E TGPE+Q LS++E+ WVYP
Sbjct: 9335 EPTGPEDQ---KLSKNEKGEWVYP 9355
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 143 EYTGPENQYGQALSRHEQERWVYP 72
E TGPE+Q LS++++ WVYP
Sbjct: 6798 EPTGPEDQ---KLSKNKKGEWVYP 6818
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 143 EYTGPENQYGQALSRHEQERWVYP 72
E TGPE+Q LS++++ WVYP
Sbjct: 7517 EPTGPEDQ---KLSKNKKGEWVYP 7537
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 143 EYTGPENQYGQALSRHEQERWVYP 72
E TGPE+Q LS++++ WVYP
Sbjct: 10054 EPTGPEDQ---KLSKNKKGEWVYP 10074
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 143 EYTGPENQYGQALSRHEQERWVYP 72
E TGPE+Q LS++E+ WVYP
Sbjct: 8291 EPTGPEDQ---KLSKNEKGEWVYP 8311
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 143 EYTGPENQYGQALSRHEQERWVYP 72
E TGPE+Q LS++E+ WVYP
Sbjct: 9335 EPTGPEDQ---KLSKNEKGEWVYP 9355
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 143 EYTGPENQYGQALSRHEQERWVYP 72
E TGPE+Q LS++++ WVYP
Sbjct: 6798 EPTGPEDQ---KLSKNKKGEWVYP 6818
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 143 EYTGPENQYGQALSRHEQERWVYP 72
E TGPE+Q LS++++ WVYP
Sbjct: 7517 EPTGPEDQ---KLSKNKKGEWVYP 7537
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 143 EYTGPENQYGQALSRHEQERWVYP 72
E TGPE+Q LS++++ WVYP
Sbjct: 10054 EPTGPEDQ---KLSKNKKGEWVYP 10074
>Z81116-3|CAB03303.1| 346|Caenorhabditis elegans Hypothetical
protein T06C12.3 protein.
Length = 346
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 401 FMLCIYSELNTIRWSSLTVL*V*HINLCRWY 309
+ L +YSE N I+W L+++ I LC Y
Sbjct: 180 YTLALYSESNVIQWEILSLIIAAGIVLCFQY 210
>U28929-1|AAN63410.1| 418|Caenorhabditis elegans Hypothetical
protein F09C12.2 protein.
Length = 418
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 143 QVKVEFIGETSRQIIRNVKGP-VRD 214
Q+ +E++G Q+IR +K P +RD
Sbjct: 267 QLLIEYLGTPDEQVIRRIKSPSIRD 291
>Z81513-6|CAB04176.1| 341|Caenorhabditis elegans Hypothetical
protein F26D2.7 protein.
Length = 341
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 401 FMLCIYSELNTIRWSSLTVL*V*HINLCRWY 309
F++ Y+E NTI+W +L++L I +C Y
Sbjct: 180 FIMMPYNENNTIQWKALSLLISAGILICFQY 210
>Z78546-7|CAB01772.1| 375|Caenorhabditis elegans Hypothetical
protein T21H8.4 protein.
Length = 375
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 222 SSLFLNLNVKLGGCDRLLQ-HYCIRLR 299
++ FLNL +K CD LL+ ++C ++R
Sbjct: 74 TNFFLNLMIKPSPCDLLLKTYFCSKIR 100
>U41991-9|AAA83349.1| 297|Caenorhabditis elegans Hypothetical
protein C42D4.11 protein.
Length = 297
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 125 NQYGQALSRHEQERWVYPFWLVISSLMQ*AHVQPKL 18
N+Y AL+ E E Y W SL++ QPK+
Sbjct: 161 NEYNAALTGLETENETYHIWKTAYSLVERYPSQPKI 196
>AL023830-4|CAA19474.1| 375|Caenorhabditis elegans Hypothetical
protein T21H8.4 protein.
Length = 375
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 222 SSLFLNLNVKLGGCDRLLQ-HYCIRLR 299
++ FLNL +K CD LL+ ++C ++R
Sbjct: 74 TNFFLNLMIKPSPCDLLLKTYFCSKIR 100
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,022,414
Number of Sequences: 27780
Number of extensions: 164024
Number of successful extensions: 401
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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