Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_A15
(409 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03850.1 68418.m00356 40S ribosomal protein S28 (RPS28B) ribo... 66 6e-12
At3g10090.1 68416.m01209 40S ribosomal protein S28 (RPS28A) simi... 66 6e-12
At5g64140.1 68418.m08054 40S ribosomal protein S28 (RPS28C) 65 1e-11
At2g43890.1 68415.m05456 polygalacturonase, putative / pectinase... 31 0.39
At4g35500.2 68417.m05045 protein kinase family protein contains ... 29 1.6
At4g35500.1 68417.m05044 protein kinase family protein contains ... 29 1.6
At4g34140.1 68417.m04845 D111/G-patch domain-containing protein ... 27 3.7
At4g02010.1 68417.m00271 protein kinase family protein contains ... 27 3.7
At1g29590.1 68414.m03618 eukaryotic translation initiation facto... 27 4.8
At1g29550.1 68414.m03614 eukaryotic translation initiation facto... 27 4.8
At3g42770.1 68416.m04468 F-box family protein contains F-box dom... 26 8.5
At1g24230.1 68414.m03055 paired amphipathic helix repeat-contain... 26 8.5
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 26 8.5
>At5g03850.1 68418.m00356 40S ribosomal protein S28 (RPS28B)
ribosomal protein S28, Arabidopsis thaliana,
EMBL:ATRP28A
Length = 64
Score = 66.5 bits (155), Expect = 6e-12
Identities = 34/53 (64%), Positives = 42/53 (79%)
Frame = +2
Query: 71 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
MD A VVKV+GRTGS+GQ TQV+V+F ++ R I+RNVKGPVR+GDILT
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52
>At3g10090.1 68416.m01209 40S ribosomal protein S28 (RPS28A) similar
to ribosomal protein S28 GB:P34789 [Arabidopsis
thaliana]
Length = 64
Score = 66.5 bits (155), Expect = 6e-12
Identities = 34/53 (64%), Positives = 42/53 (79%)
Frame = +2
Query: 71 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
MD A VVKV+GRTGS+GQ TQV+V+F ++ R I+RNVKGPVR+GDILT
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52
>At5g64140.1 68418.m08054 40S ribosomal protein S28 (RPS28C)
Length = 64
Score = 65.3 bits (152), Expect = 1e-11
Identities = 33/53 (62%), Positives = 42/53 (79%)
Frame = +2
Query: 71 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
MD A VVKV+GRTGS+GQ TQV+V+F ++ R I+RNVKGPVR+GD+LT
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRFIMRNVKGPVREGDVLT 52
>At2g43890.1 68415.m05456 polygalacturonase, putative / pectinase,
putative similar to SP|P48979 Polygalacturonase
precursor (EC 3.2.1.15) (PG) (Pectinase) {Prunus
persica}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 392
Score = 30.7 bits (66), Expect = 0.39
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 229 SEDVSVTDGSFHVSDDLTAGLPNELDLHLSTL 134
S V+VTDG+FH DD + P +L++S L
Sbjct: 204 SAGVTVTDGTFHTGDDCISIGPGTRNLYMSKL 235
>At4g35500.2 68417.m05045 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 439
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 47 LSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 190
LS+ +DK + R++ +G GQ + +EF+G++ ++IR
Sbjct: 87 LSAAADGDLDKTKCVVRLIDHFKHSGPNGQHLCMVLEFLGDSLLRLIR 134
>At4g35500.1 68417.m05044 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 438
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 47 LSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 190
LS+ +DK + R++ +G GQ + +EF+G++ ++IR
Sbjct: 86 LSAAADGDLDKTKCVVRLIDHFKHSGPNGQHLCMVLEFLGDSLLRLIR 133
>At4g34140.1 68417.m04845 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 418
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 152 PSLEYTGPENQYGQALSRHEQERWVYPFWLVISS 51
P ++ E +G+A E+ERW+ + VI S
Sbjct: 134 PEEDFDPQEENFGEAAPSSEEERWLAQYGQVIES 167
>At4g02010.1 68417.m00271 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 725
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 10 KHASFGCTCAYCIKLDITSQN 72
K S GC C Y IKLDI N
Sbjct: 159 KRRSIGCHCVYPIKLDILLLN 179
>At1g29590.1 68414.m03618 eukaryotic translation initiation factor
4E, putative / eIF-4E, putative / eIF4E, putative / mRNA
cap-binding protein, putative similar to SP|O23252
Eukaryotic translation initiation factor 4E (eIF-4E)
(eIF4E) (mRNA cap-binding protein) (eIF-4F 25 kDa
subunit) (eIF-4F P26 subunit) {Arabidopsis thaliana};
contains Pfam profile PF01652: Eukaryotic initiation
factor 4E
Length = 285
Score = 27.1 bits (57), Expect = 4.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 97 CRESAWPYWFSGPVYSSEGRVHWG 168
C +++W +WF P S +V WG
Sbjct: 111 CFQNSWTFWFDNP-SSKSNQVIWG 133
>At1g29550.1 68414.m03614 eukaryotic translation initiation factor
4E, putative / eIF-4E, putative / eIF4E, putative / mRNA
cap-binding protein, putative similar to SP|O23252
Eukaryotic translation initiation factor 4E (eIF-4E)
(eIF4E) (mRNA cap-binding protein) (eIF-4F 25 kDa
subunit) (eIF-4F P26 subunit) {Arabidopsis thaliana};
contains Pfam profile PF01652: Eukaryotic initiation
factor 4E
Length = 240
Score = 27.1 bits (57), Expect = 4.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 97 CRESAWPYWFSGPVYSSEGRVHWG 168
C +++W +WF P S +V WG
Sbjct: 66 CFQNSWTFWFDNP-SSKSNQVIWG 88
>At3g42770.1 68416.m04468 F-box family protein contains F-box domain
Pfam:PF00646
Length = 532
Score = 26.2 bits (55), Expect = 8.5
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +3
Query: 81 PTFLLVS*KCLAVLVLRASVLK*RSSSLGRPAVRSSET*KDPSVTETSSLFLNLNVKLGG 260
P FL+ C A L + + S+G P SS+T K SVT T F++ +KL
Sbjct: 174 PQFLIFLTACPA---LEDLTIYQKPHSVGMPYHISSKTIKRLSVTYTCGYFVDYGLKLFN 230
Query: 261 CDRLLQ-HYCIRLRHSH 308
++ +Y +RH +
Sbjct: 231 TPSVVDLYYSDYVRHKY 247
>At1g24230.1 68414.m03055 paired amphipathic helix repeat-containing
protein weak similarity to transcriptional co-repressor
SIN3A [Drosophila melanogaster] GI:2570794; contains
Pfam profile PF02671: Paired amphipathic helix repeat
Length = 245
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 2 AFRNTPALVARVLIALSSILQAKMDKPNVLARVVKVL 112
+FR+ PA A+ L L+ ++D P+ +AR+ +++
Sbjct: 97 SFRDEPAKYAQFLEILNDYSARRVDAPSAVARMTELM 133
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 26.2 bits (55), Expect = 8.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 85 RSCSCRESAWPYWFSGPVYSSEGRVH 162
R C R S+W W SG Y+ ++
Sbjct: 285 RFCCSRRSSWKTWISGVYYTDLATIY 310
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,470,680
Number of Sequences: 28952
Number of extensions: 151979
Number of successful extensions: 383
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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