Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_A11
(457 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0) 89 1e-18
SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026) 62 2e-10
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44) 27 5.6
SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_55624| Best HMM Match : PHD (HMM E-Value=3.8) 27 5.6
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037) 27 7.4
SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_37245| Best HMM Match : Disintegrin (HMM E-Value=7.9) 27 9.7
SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09) 27 9.7
>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
Length = 113
Score = 89.4 bits (212), Expect = 1e-18
Identities = 38/57 (66%), Positives = 43/57 (75%)
Frame = +2
Query: 254 YGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 424
+GGQ+KP+F IVLR+EC CK R Q+ LKRCKHFELGGDKKRKGQMIQF
Sbjct: 57 FGGQTKPVFHKKAKTTKKIVLRMECTQCKYRKQMPLKRCKHFELGGDKKRKGQMIQF 113
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 136 GRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGLRWSVQTHLQKEGK 294
G+ + K T+Y K+ + + +RRYDRKQ G + K+ K
Sbjct: 21 GKKCRRHTLHKVTQY---KTGKASLFAQGKRRYDRKQSGFGGQTKPVFHKKAK 70
>SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)
Length = 39
Score = 62.5 bits (145), Expect = 2e-10
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +2
Query: 308 IVLRLECADCKVRSQVALKRCKHFELGGDKKRK 406
IVLR+EC CK R Q+ LKRCKHFELGGDKKRK
Sbjct: 7 IVLRMECTQCKYRKQMPLKRCKHFELGGDKKRK 39
>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1442
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 320 LECADCKVRSQVALKRCKHFELG 388
+EC +CK R +A C HF+ G
Sbjct: 1113 IECPNCKFRYDLAKGGCMHFKCG 1135
>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
Length = 251
Score = 27.5 bits (58), Expect = 5.6
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +2
Query: 224 EDVMIVNSRXYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKK 400
+D +I NS+ +SK + I L C C V +A KRC+ +G K
Sbjct: 106 DDSLIKNSQSE--ESKVFYNKIVLPTSNITTALNCKTCNVVYLIACKRCQKQYVGETSK 162
>SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1105
Score = 27.5 bits (58), Expect = 5.6
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +1
Query: 4 FACLNQTKKCQSVKCHCW 57
F C+ K+C S C CW
Sbjct: 41 FLCMRLLKRCHSCACACW 58
>SB_55624| Best HMM Match : PHD (HMM E-Value=3.8)
Length = 349
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 164 QSTQGITVQ-KVQGKARCPGXEDVMIVNSRXYGGQSK 271
Q+TQG Q + +GKA C G D +V S G SK
Sbjct: 71 QTTQGGATQGEKEGKASCNGIADGEVVKSTVNGTASK 107
>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
Length = 303
Score = 27.1 bits (57), Expect = 7.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 437 LEAFKIGSSVPFSSCHHRAQSACI 366
+E + +G S+ + C H SACI
Sbjct: 261 MEEYAVGDSMKYLPCRHNFHSACI 284
>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = -1
Query: 217 WAACLSLDFLYCDTLCTLWHLHFLQYVLRCFG 122
W L F+ C TLC W + Y R G
Sbjct: 283 WIGAWWLGFVICGTLCIFWSIWLFGYPKRIPG 314
>SB_37245| Best HMM Match : Disintegrin (HMM E-Value=7.9)
Length = 227
Score = 26.6 bits (56), Expect = 9.7
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Frame = +1
Query: 49 HCWIKVSLFDV---C*YRAERTQKW*TYQNSAG-----RTAKNVNATKYTRYHSTKSPRK 204
HC I L + C Y +RT+K + N G RT + ++ + +S++ PR+
Sbjct: 57 HCSINQRLLTLETCCGYEYDRTRKSMSSPNFQGSSRAHRTPQEGESSLKRKENSSQGPRQ 116
Query: 205 GTLPRXRRRYDRKQQG 252
R R R R++QG
Sbjct: 117 RLRVRLRYRICRERQG 132
>SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 877
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 344 RSQVALKRCKHFELGGDKKR 403
+S++A RC H LGGD +R
Sbjct: 495 QSRIASPRCAHRPLGGDSRR 514
>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
Length = 321
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 417 IICPFLFLSPPSSKCLHLFNATCDLTLQSAHSR 319
I+C F +P +KCLH F C L +S+
Sbjct: 246 IMCRKTFKNPVVTKCLHYFCEACALQHYKKNSK 278
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,703,580
Number of Sequences: 59808
Number of extensions: 272257
Number of successful extensions: 800
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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