Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_A10
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5) 30 1.4
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4) 29 3.3
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37) 29 3.3
SB_6351| Best HMM Match : IncA (HMM E-Value=0.13) 29 3.3
SB_20497| Best HMM Match : Homeobox (HMM E-Value=1.4013e-45) 29 4.4
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20) 28 7.6
SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 28 7.6
SB_22216| Best HMM Match : PGAMP (HMM E-Value=4) 28 7.6
SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 512
Score = 31.1 bits (67), Expect = 0.82
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = -3
Query: 405 FARGPLLLVQAVAG*PVLGLELLGQIECVVDQSESS*LATSEVCLETEYEHYIGSNLVHF 226
F +G L + V ++GLEL +I+ ++D++ S CL +E + N F
Sbjct: 56 FFQGDSTLKEPVQKILIIGLELAKEIQKLIDEASSGLNIKHAACLPSEVPAF--CNTERF 113
Query: 225 GELLTDLGLA 196
G LL D+ A
Sbjct: 114 GLLLVDVRCA 123
>SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)
Length = 585
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/76 (31%), Positives = 39/76 (51%)
Frame = +3
Query: 180 RKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQVNWIRFDLRHTRSGQEVRAQAQ 359
R+T++ DR A+ NV S V++R D ++ V+ ++ D R + SGQ+V ++
Sbjct: 281 RRTSQSNDR----AQGNVTVVSTAHVQVRADD-VQAMNVSGVKSDGRPSSSGQDVYDGSR 335
Query: 360 VSPPRPVREEEAHAQT 407
S P E AQT
Sbjct: 336 QSTHGPALPWEELAQT 351
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 252 YIGSNLVHFGELLTDLGLADGWFSWM*NIANHLLARQQSVGHELASANS 106
+I N +F + DLG+A + + + +H L R Q+VGH A S
Sbjct: 289 FIDFNDFYFSNRVVDLGIALAYIMMLPQVNSH-LTRPQAVGHMFAGYQS 336
>SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)
Length = 166
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 352 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 444
+H LA H +++RP+ R+ K R++K+R
Sbjct: 79 RHGLASHDKKKRERPSLVARERMKKRLRKIR 109
>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
Length = 1376
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +1
Query: 325 LDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKV 441
LDL KHR RH EKK K RK +KN M+++
Sbjct: 1000 LDLLLAHATKHRGRRHRS-EKKEKANKARKCQKNYMRRL 1037
>SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)
Length = 417
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 352 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 444
+H LA H +++RP+ R+ K R++K+R
Sbjct: 378 RHGLASHDKKKRERPSLVARERMKKRLRKIR 408
>SB_20497| Best HMM Match : Homeobox (HMM E-Value=1.4013e-45)
Length = 527
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -3
Query: 153 LARQQSVGHELASANSRCSFTHFELFSIIRRLHARVSAKTREKERV 16
+AR+ + E S RC F +LF+ I HARV K R +E +
Sbjct: 398 IARRFVIAFE-GSFRLRCLFNALKLFASITITHARVRDKRRVREGI 442
>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
Length = 1468
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -1
Query: 278 FVLKPNTNTTSGVTL---YILASFSRISVLLTVGFPGCKTSQT 159
F+ PN ++ TL ++ S R+ V+ +VG PGC S T
Sbjct: 904 FISIPNITISNTFTLSWWMLVQSVQRVYVMTSVGNPGCGASPT 946
>SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 1074
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -3
Query: 228 FGELLTDLGLADGWFSWM*NIANHLLA 148
FGEL+ D G + F+W+ N++N +LA
Sbjct: 76 FGELMLDAGWSRNAFNWL-NMSNSMLA 101
>SB_22216| Best HMM Match : PGAMP (HMM E-Value=4)
Length = 132
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -2
Query: 412 YAVCAWASSSRTGRGGLTCAWARTSWPDRVCRRSKRIQL-TCHLRS 278
Y CA S G+ C +A + PD RRS R T H RS
Sbjct: 62 YGTCAMPDSGIPPPPGVLCRYAPCAMPDPKMRRSNRSSSGTTHNRS 107
>SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 349 PKHRLARHGLYEKKRPTRKQRKERKNRMKK 438
P+ L H L ++ R R+QR ER++R+K+
Sbjct: 21 PQQILFTHRLEQRYRVERRQRLERRHRVKR 50
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,997,093
Number of Sequences: 59808
Number of extensions: 412997
Number of successful extensions: 1101
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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