Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_A08
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45210| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)                   29   4.0  
SB_26071| Best HMM Match : PVL_ORF50 (HMM E-Value=1.2)                 27   9.1  
SB_52160| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_16325| Best HMM Match : PVL_ORF50 (HMM E-Value=7)                   27   9.1  

>SB_45210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -1

Query: 467 STTRSRISSPNFCVPISRKLHLACLYPLRYRAYA 366
           S TRSR +SP  C PIS+K+  +C    R R+Y+
Sbjct: 57  SKTRSRSASP--CPPISKKISTSCDRRDRSRSYS 88


>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
          Length = 435

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 253 KPSRKTKTPTTYWINMRITNPRNTKRFCTTRTGP 354
           K SRKTKT +    +++    RNTK    T+T P
Sbjct: 89  KTSRKTKTSSNTKTSLKTKTSRNTKTSRNTKTKP 122


>SB_26071| Best HMM Match : PVL_ORF50 (HMM E-Value=1.2)
          Length = 178

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 23/68 (33%), Positives = 34/68 (50%)
 Frame = +3

Query: 120 QKSSVTVIEWLN*SQRVRYDMGARSREXXXXXXXXXXVFGESINKTVKKDKDADNLLDQY 299
           QKS+V V EWL   +  R  MG+ SR           +F +S+ K  +K+K A+  L Q 
Sbjct: 5   QKSNVAVAEWLR--RWTRNPMGS-SRAGSNPARNDTFLFEKSLIKITEKNK-AEMKLIQK 60

Query: 300 EDYEPAEY 323
            +   AE+
Sbjct: 61  SNVAVAEW 68


>SB_52160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 23/68 (33%), Positives = 34/68 (50%)
 Frame = +3

Query: 120 QKSSVTVIEWLN*SQRVRYDMGARSREXXXXXXXXXXVFGESINKTVKKDKDADNLLDQY 299
           QKS+V V EWL   +  R  MG+ SR           +F +S+ K  +K+K A+  L Q 
Sbjct: 5   QKSNVAVAEWLR--RWTRNPMGS-SRAGSNPARNDTFLFEKSLIKITEKNK-AEMKLIQK 60

Query: 300 EDYEPAEY 323
            +   AE+
Sbjct: 61  SNVAVAEW 68


>SB_16325| Best HMM Match : PVL_ORF50 (HMM E-Value=7)
          Length = 201

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 117 FQKSSVTVIEWLN*SQRVRYDMGARSREXXXXXXXXXXVFGESINKTVKKDKDADN 284
           FQKS V V EWL   +  R  MG+ SR           +F +S+ K  K+  D ++
Sbjct: 117 FQKSKVAVAEWLR--RWTRNPMGS-SRAGSNPARNDTFLFEKSLIKITKRIPDQNS 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,321,226
Number of Sequences: 59808
Number of extensions: 366530
Number of successful extensions: 1210
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)