Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_A06
(414 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L04483-1|AAA99893.1| 83|Homo sapiens ribosomal protein S21 pro... 68 1e-11
CR542132-1|CAG46929.1| 83|Homo sapiens RPS21 protein. 68 1e-11
BC021990-1|AAH21990.1| 83|Homo sapiens ribosomal protein S21 p... 68 1e-11
AL121832-3|CAC21458.1| 83|Homo sapiens ribosomal protein S21 p... 68 1e-11
AJ250907-1|CAB83213.1| 83|Homo sapiens ribosomal protein S21 p... 68 1e-11
AB061843-1|BAB79481.1| 83|Homo sapiens ribosomal protein S21 p... 68 1e-11
BC018140-1|AAH18140.1| 81|Homo sapiens RPS21 protein protein. 64 2e-10
X79563-1|CAA56100.2| 97|Homo sapiens 8.2 kDa differentiation f... 63 3e-10
BC027976-1|AAH27976.1| 66|Homo sapiens RPS21 protein protein. 63 3e-10
AL121832-2|CAC29248.1| 90|Homo sapiens ribosomal protein S21 p... 63 3e-10
AL121832-1|CAC29247.1| 66|Homo sapiens ribosomal protein S21 p... 63 3e-10
AB007157-1|BAA25821.1| 54|Homo sapiens ribosomal protein S21 p... 55 8e-08
>L04483-1|AAA99893.1| 83|Homo sapiens ribosomal protein S21
protein.
Length = 83
Score = 67.7 bits (158), Expect = 1e-11
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +2
Query: 146 QLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDGILAKNY 298
Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL K DGI++KN+
Sbjct: 33 QMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 83
Score = 63.3 bits (147), Expect = 3e-10
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +1
Query: 49 MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 141
MQNDAGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>CR542132-1|CAG46929.1| 83|Homo sapiens RPS21 protein.
Length = 83
Score = 67.7 bits (158), Expect = 1e-11
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +2
Query: 146 QLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDGILAKNY 298
Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL K DGI++KN+
Sbjct: 33 QMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 83
Score = 63.3 bits (147), Expect = 3e-10
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +1
Query: 49 MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 141
MQNDAGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>BC021990-1|AAH21990.1| 83|Homo sapiens ribosomal protein S21
protein.
Length = 83
Score = 67.7 bits (158), Expect = 1e-11
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +2
Query: 146 QLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDGILAKNY 298
Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL K DGI++KN+
Sbjct: 33 QMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 83
Score = 63.3 bits (147), Expect = 3e-10
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +1
Query: 49 MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 141
MQNDAGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>AL121832-3|CAC21458.1| 83|Homo sapiens ribosomal protein S21
protein.
Length = 83
Score = 67.7 bits (158), Expect = 1e-11
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +2
Query: 146 QLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDGILAKNY 298
Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL K DGI++KN+
Sbjct: 33 QMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 83
Score = 63.3 bits (147), Expect = 3e-10
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +1
Query: 49 MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 141
MQNDAGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>AJ250907-1|CAB83213.1| 83|Homo sapiens ribosomal protein S21
protein.
Length = 83
Score = 67.7 bits (158), Expect = 1e-11
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +2
Query: 146 QLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDGILAKNY 298
Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL K DGI++KN+
Sbjct: 33 QMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 83
Score = 63.3 bits (147), Expect = 3e-10
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +1
Query: 49 MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 141
MQNDAGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>AB061843-1|BAB79481.1| 83|Homo sapiens ribosomal protein S21
protein.
Length = 83
Score = 67.7 bits (158), Expect = 1e-11
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +2
Query: 146 QLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDGILAKNY 298
Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL K DGI++KN+
Sbjct: 33 QMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 83
Score = 63.3 bits (147), Expect = 3e-10
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +1
Query: 49 MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 141
MQNDAGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>BC018140-1|AAH18140.1| 81|Homo sapiens RPS21 protein protein.
Length = 81
Score = 64.1 bits (149), Expect = 2e-10
Identities = 29/49 (59%), Positives = 36/49 (73%)
Frame = +2
Query: 146 QLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDGILAK 292
Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL K DGI++K
Sbjct: 33 QMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSK 81
Score = 63.3 bits (147), Expect = 3e-10
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +1
Query: 49 MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 141
MQNDAGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>X79563-1|CAA56100.2| 97|Homo sapiens 8.2 kDa differentiation
factor protein.
Length = 97
Score = 63.3 bits (147), Expect = 3e-10
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +1
Query: 49 MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 141
MQNDAGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>BC027976-1|AAH27976.1| 66|Homo sapiens RPS21 protein protein.
Length = 66
Score = 63.3 bits (147), Expect = 3e-10
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +1
Query: 49 MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 141
MQNDAGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>AL121832-2|CAC29248.1| 90|Homo sapiens ribosomal protein S21
protein.
Length = 90
Score = 63.3 bits (147), Expect = 3e-10
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +1
Query: 49 MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 141
MQNDAGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
Score = 37.1 bits (82), Expect = 0.023
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +2
Query: 146 QLVIADVDPATGRAADTSKMYVVCGAIRRM 235
Q+ +A+VD TGR K Y +CGAIRRM
Sbjct: 33 QMNVAEVDKVTGRFNGQFKTYAICGAIRRM 62
>AL121832-1|CAC29247.1| 66|Homo sapiens ribosomal protein S21
protein.
Length = 66
Score = 63.3 bits (147), Expect = 3e-10
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +1
Query: 49 MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 141
MQNDAGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>AB007157-1|BAA25821.1| 54|Homo sapiens ribosomal protein S21
protein.
Length = 54
Score = 55.2 bits (127), Expect = 8e-08
Identities = 25/42 (59%), Positives = 30/42 (71%)
Frame = +2
Query: 146 QLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTK 271
Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL K
Sbjct: 13 QMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAK 54
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,855,806
Number of Sequences: 237096
Number of extensions: 889287
Number of successful extensions: 1632
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1632
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3087725076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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