Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_A06
(414 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-12|AAC48297.2| 88|Caenorhabditis elegans Ribosomal prot... 61 4e-10
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein. 34 0.035
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso... 34 0.035
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso... 34 0.035
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 34 0.035
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 34 0.035
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein. 34 0.035
U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeo... 29 1.0
AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protei... 29 1.0
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z92967-1|CAB07477.1| 220|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 27 7.1
Z73103-3|CAA97423.1| 540|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr... 26 9.4
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr... 26 9.4
>U00033-12|AAC48297.2| 88|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 21 protein.
Length = 88
Score = 60.9 bits (141), Expect = 4e-10
Identities = 28/51 (54%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Frame = +2
Query: 146 QLVIADVDPATGRAAD-TSKMYVVCGAIRRMGESDDCIVRLTKKDGILAKN 295
Q+ DVDP TGR S Y +CGAIRRMGESDD I+RL +KDG++ ++
Sbjct: 33 QIDFVDVDPETGRMIPGKSTRYAICGAIRRMGESDDAILRLAQKDGLVPRD 83
Score = 54.0 bits (124), Expect = 4e-08
Identities = 23/31 (74%), Positives = 27/31 (87%)
Frame = +1
Query: 49 MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 141
MQNDAG+ V+LY PRKCS+SNR+I KDHAS
Sbjct: 1 MQNDAGQTVELYVPRKCSSSNRIIGPKDHAS 31
>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
Length = 4250
Score = 34.3 bits (75), Expect = 0.035
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +2
Query: 35 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQXQLVIADVDPATGRAADTSKMY 208
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 839 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 895
Query: 209 VVCGAIRRMGES-DDCIVRLTKKDGILA 289
V A +GE+ C++ +T IL+
Sbjct: 896 SV-RASNLLGEAIRQCVITVTPAGQILS 922
>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform b protein.
Length = 4203
Score = 34.3 bits (75), Expect = 0.035
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +2
Query: 35 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQXQLVIADVDPATGRAADTSKMY 208
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 756 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 812
Query: 209 VVCGAIRRMGES-DDCIVRLTKKDGILA 289
V A +GE+ C++ +T IL+
Sbjct: 813 SV-RASNLLGEAIRQCVITVTPAGQILS 839
>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform a protein.
Length = 4488
Score = 34.3 bits (75), Expect = 0.035
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +2
Query: 35 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQXQLVIADVDPATGRAADTSKMY 208
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 1133
Query: 209 VVCGAIRRMGES-DDCIVRLTKKDGILA 289
V A +GE+ C++ +T IL+
Sbjct: 1134 SV-RASNLLGEAIRQCVITVTPAGQILS 1160
>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform d protein.
Length = 4369
Score = 34.3 bits (75), Expect = 0.035
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +2
Query: 35 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQXQLVIADVDPATGRAADTSKMY 208
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 1133
Query: 209 VVCGAIRRMGES-DDCIVRLTKKDGILA 289
V A +GE+ C++ +T IL+
Sbjct: 1134 SV-RASNLLGEAIRQCVITVTPAGQILS 1160
>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform c protein.
Length = 4447
Score = 34.3 bits (75), Expect = 0.035
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +2
Query: 35 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQXQLVIADVDPATGRAADTSKMY 208
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 1133
Query: 209 VVCGAIRRMGES-DDCIVRLTKKDGILA 289
V A +GE+ C++ +T IL+
Sbjct: 1134 SV-RASNLLGEAIRQCVITVTPAGQILS 1160
>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
Length = 4219
Score = 34.3 bits (75), Expect = 0.035
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +2
Query: 35 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQXQLVIADVDPATGRAADTSKMY 208
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 756 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 812
Query: 209 VVCGAIRRMGES-DDCIVRLTKKDGILA 289
V A +GE+ C++ +T IL+
Sbjct: 813 SV-RASNLLGEAIRQCVITVTPAGQILS 839
>U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeobox
protein 21 protein.
Length = 495
Score = 29.5 bits (63), Expect = 1.0
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 47 KCRTTPVNSLTCTARGNARPATASSTLRTMLQXQLVIA--DVDPATGRAADTSKM 205
K RTTP S T R ++ ASST + + ++ D GRA +T K+
Sbjct: 195 KIRTTPEQSKAATKRQSSTTVRASSTCGSSVSSTSTVSSPDYTAKKGRATETPKL 249
>AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protein
protein.
Length = 495
Score = 29.5 bits (63), Expect = 1.0
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 47 KCRTTPVNSLTCTARGNARPATASSTLRTMLQXQLVIA--DVDPATGRAADTSKM 205
K RTTP S T R ++ ASST + + ++ D GRA +T K+
Sbjct: 195 KIRTTPEQSKAATKRQSSTTVRASSTCGSSVSSTSTVSSPDYTAKKGRATETPKL 249
>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical
protein C32E12.4 protein.
Length = 1553
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 53 RTTPVNSLTCTARGNARPATASSTLRTMLQXQLVIADVDPATGRAADTS 199
R T + + T+ GN+ +T+S T R + + I DP T RA S
Sbjct: 56 RPTSYRAGSITSGGNSSNSTSSYTPRNVRAGSVSIGAYDPPTSRADSVS 104
>Z92967-1|CAB07477.1| 220|Caenorhabditis elegans Hypothetical
protein T25E12.4b protein.
Length = 220
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 164 VDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDG 280
V + G + +S + A R +G + DC+V +TK++G
Sbjct: 123 VADSEGAGSYSSFSSIASTASRMLGRAADCLVLMTKRNG 161
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = +2
Query: 56 TTPVNSLTCTARGNARPATASSTLRTMLQXQLVIADVDPATGRAADTS 199
TTP + T T T++ST +++ V + +P T + T+
Sbjct: 263 TTPTTTTTTTIPSTTSSTTSTSTTTSVVTTTTVTSTTEPTTSTSTPTT 310
>Z73103-3|CAA97423.1| 540|Caenorhabditis elegans Hypothetical
protein C08F8.4 protein.
Length = 540
Score = 26.6 bits (56), Expect = 7.1
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -2
Query: 134 WSLAWMRRLLAEHFLGQYKS 75
W++AW+RR++ E G Y++
Sbjct: 359 WTVAWLRRVVYERVEGPYRT 378
>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 247 IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 152
+RL+ +DS T FR CG +Y NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131
>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 247 IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 152
+RL+ +DS T FR CG +Y NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,858,685
Number of Sequences: 27780
Number of extensions: 139675
Number of successful extensions: 405
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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