Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_A04
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 119 3e-28
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 78 8e-16
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 52 8e-08
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 50 2e-07
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 48 1e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 47 2e-06
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 46 3e-06
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 46 3e-06
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 46 5e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 45 7e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 44 1e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 44 2e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 43 4e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 43 4e-05
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 42 5e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 39 5e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 8e-04
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 38 0.001
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 37 0.002
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 36 0.003
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 36 0.003
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 36 0.004
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 35 0.008
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 35 0.010
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 34 0.013
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 34 0.013
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.031
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.041
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 31 0.12
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 30 0.29
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 29 0.50
SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyce... 28 1.2
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 1.5
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 27 2.0
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 26 4.7
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 26 4.7
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 26 4.7
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 4.7
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 6.2
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 6.2
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.2
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 119 bits (287), Expect = 3e-28
Identities = 55/113 (48%), Positives = 78/113 (69%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 259
E GK+F+GGL+WET+ ++L+ YF ++GEV+DC VM++S +GRSRGFGF+TF +P VN V
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
Query: 260 LQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRXIF 418
+ H LDG+ IDPK PR Q+ K+F+GG+P + TE + R F
Sbjct: 221 MSK-EHHLDGKIIDPKRAIPREEQEKT-----AKMFVGGVPGDCTEEEFRNFF 267
Score = 67.7 bits (158), Expect = 1e-12
Identities = 27/90 (30%), Positives = 53/90 (58%)
Frame = +2
Query: 53 RMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
R P + ++ K+FVGG+ + ++E + +F+++G V+D +M + ++GR RGFGFVT+
Sbjct: 236 RAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY 295
Query: 233 ADPSLVNLVLQNGPHQLDGRTIDPKPCNPR 322
+ S V + + G+ ++ K P+
Sbjct: 296 ENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 33.9 bits (74), Expect = 0.018
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDE 512
FF ++G+V++ +M D+ + G GF+++E+E
Sbjct: 266 FFNQFGRVLDATLMMDKDTGRPRGFGFVTYENE 298
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 78.2 bits (184), Expect = 8e-16
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 13/132 (9%)
Frame = +2
Query: 62 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 241
P D +E +FVG LSW + L + F YG ++ V+ + +SGRS+G+G+V F P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 242 SLVN-LVLQNGPHQLDGRTI-----DPKPCNPRTLQKPKRGG-----GYPK--VFLGGLP 382
V NG ++DGR + +P+P NP+ + + G P VF+G L
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLS 374
Query: 383 SNVTETDLRXIF 418
N TE DL F
Sbjct: 375 FNATEDDLSTAF 386
Score = 49.6 bits (113), Expect = 3e-07
Identities = 28/96 (29%), Positives = 47/96 (48%)
Frame = +2
Query: 65 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 244
D + +FVG LS+ ++++L F G++ + + +SGR +GFG+VTF+D
Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDID 418
Query: 245 LVNLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGG 352
++ H + GR PC P+ GGG
Sbjct: 419 SAKKCVEMNGHFIAGR-----PCR-LDFSTPRTGGG 448
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 51.6 bits (118), Expect = 8e-08
Identities = 22/48 (45%), Positives = 34/48 (70%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 235
LFV L+++T Q++L +FS G + VV+ N E+G +RG+GFVTF+
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFS 54
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 50.4 bits (115), Expect = 2e-07
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Frame = +2
Query: 68 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 247
M D K +FVG L++E +E L RYF G + ++++ ++ +GF ++ F D
Sbjct: 264 MPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMG 323
Query: 248 VN-LVLQNGPHQLDGRTI---DPKPCNPRTLQKPKRG 346
V+ +L N +GRT+ K P+++ + KRG
Sbjct: 324 VDKALLLNEKKMPEGRTLRIMRAKSTKPKSITRSKRG 360
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 47.6 bits (108), Expect = 1e-06
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 241
++D K LFVG L ++S E LQ +F R G+V + + SGR +G+ FV F +P
Sbjct: 87 NNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINP 143
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 47.2 bits (107), Expect = 2e-06
Identities = 17/66 (25%), Positives = 40/66 (60%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
D + +++G L ++ +++++ FS +GE +D ++++ E+G+S+GF F+ + D
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRST 85
Query: 251 NLVLQN 268
L + N
Sbjct: 86 VLAVDN 91
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 46.4 bits (105), Expect = 3e-06
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +2
Query: 65 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 244
D + + ++VG + + + E LQ +F+ G V ++ + +G +GF ++ F++PS
Sbjct: 48 DKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPS 107
Query: 245 LV-NLVLQNG 271
LV N +L NG
Sbjct: 108 LVPNALLLNG 117
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 46.4 bits (105), Expect = 3e-06
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF--ADPSL 247
D +LFVG L + + E+L + FS Y ++ V+++ E G++RGFGFV+F +D L
Sbjct: 26 DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFL 84
Query: 248 VNLVLQNG------PHQLDGRTIDPKP--CNPRTLQKPKRGGGYPKVFLGG 376
+NG P +L T D KP N +T+ R Y + G
Sbjct: 85 KAWREKNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSKIRNSLYSRTIHHG 135
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 45.6 bits (103), Expect = 5e-06
Identities = 19/49 (38%), Positives = 32/49 (65%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
LFVG L +ET+ +L+ +F + G++ +M ++G+ +GFGFV F D
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278
Score = 29.5 bits (63), Expect = 0.38
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Frame = +2
Query: 116 ETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPHQLDGRT 295
E S+EN++ + I + M + +++GF +V FA + L LQ L+GR
Sbjct: 135 EVSEENIKPITTEQITRIH-MPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKALNGRN 193
Query: 296 I--------DPKPCNP-RTLQKPKRGGGYPK-----VFLGGLPSNVTETDLRXIF 418
I +P P TL K K +F+G L T+ DL+ F
Sbjct: 194 ILIKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHF 248
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
FG+ G++ V +M + K G GF+ F D
Sbjct: 248 FGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 45.2 bits (102), Expect = 7e-06
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = +2
Query: 62 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 241
P+ ++ LFV G++ ++ LQ+ FS++G V +M+ + SRGFGF++F+
Sbjct: 93 PEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTV 152
Query: 242 SLVNLVLQN-GPHQLDGRTIDPKPCNPRTLQKPKRG 346
+ N + GR ++ + P G
Sbjct: 153 EEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPG 188
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 44.4 bits (100), Expect = 1e-05
Identities = 17/47 (36%), Positives = 32/47 (68%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
+F+ LS++T + +++R F+RYG + V++N +G+S G+ FV F
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVF 148
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 43.6 bits (98), Expect = 2e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
D+ L V LS +T +E L+ F R+G + + K+ E+GR++GF FV++ D
Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYD 252
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 42.7 bits (96), Expect = 4e-05
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
LFV L+ T E+L+ FSR+G++I C V+++ E+G S + F+ F
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEF 292
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 42.7 bits (96), Expect = 4e-05
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN-LVLQN 268
LF+ L E E L+ FS +G + +M + E G+S+GFGFV + P N V +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEM 424
Query: 269 GPHQLDGRTI 298
L G+ +
Sbjct: 425 NQRMLAGKPL 434
Score = 33.9 bits (74), Expect = 0.018
Identities = 13/49 (26%), Positives = 30/49 (61%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
+++ L E +++ F ++GE+ ++K+ ++ + RGFGFV +A+
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYAN 310
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 42.3 bits (95), Expect = 5e-05
Identities = 18/62 (29%), Positives = 37/62 (59%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 259
+KG L+VG L ++ ++ YFS++G V+ + +N ++G S+ + F+ F + N+V
Sbjct: 103 KKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVV 162
Query: 260 LQ 265
+
Sbjct: 163 AE 164
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.1 bits (87), Expect = 5e-04
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
++VG L W TS NL F+ G VI + +GRS+GFG V F
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARI-AYEPTGRSKGFGVVQF 327
Score = 31.9 bits (69), Expect = 0.071
Identities = 12/52 (23%), Positives = 31/52 (59%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 235
++ +++VG LS++ L+ + + G V++C ++ N +G S+G + ++
Sbjct: 64 QERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNGLSKGCAIIEYS 114
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 38.3 bits (85), Expect = 8e-04
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 271
++VG + +E ++E + F + G V ++ + ESG+ +G+GF + DP+ ++N
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 272 PHQLDG----RTIDPKPCNPRTLQK---PKRGGGYPKVF 367
+ G R P R L K P R G YP+ +
Sbjct: 67 NNYDAGTRRLRVDFPTADQIRRLDKLLGPSRYGYYPQSY 105
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 37.9 bits (84), Expect = 0.001
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 244
D K K+++ L ++ + +G+++ ++KN G S+GF F F +PS
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPS 362
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
LFVG L + L FS G+++ + E+GRS+G+GFV++
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSY 147
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 36.3 bits (80), Expect = 0.003
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
+FVG + ++ S++ + F++ G V ++ + E+G +G+GF F D
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFD 57
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 36.3 bits (80), Expect = 0.003
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
+++ GL TS ENL Y +R+G+V + + E+ +G+GF F +
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEE 346
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXS 518
+ R+GKV + D G GF FE+E S
Sbjct: 315 YTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKS 349
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 35.9 bits (79), Expect = 0.004
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
+LFVG + + ++E++ +F YG+++DC +M GFGFV D
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVED 46
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.1 bits (77), Expect = 0.008
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYF-SRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
+FVG LS ++ ++ F SRY +M + ++ SRG+GFV F D
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTD 237
Score = 33.5 bits (73), Expect = 0.023
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 62 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
P D +FVGGLS S+E L+ F +GE++ + +G GFV F +
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPP------GKGCGFVQFVN 347
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDE 512
F RY IM D S G GF+ F DE
Sbjct: 206 FASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDE 238
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 34.7 bits (76), Expect = 0.010
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP-SLVNLVLQ 265
+L V + + + E+++ F +G+ I+ V ++ + RS+GFG++ + +P S N + +
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGD-IEFVHLQRDDQNRSKGFGYIQYRNPISARNALEK 399
Query: 266 NGPHQLDGRTI 298
L GR +
Sbjct: 400 MNGFDLAGRNM 410
Score = 34.3 bits (75), Expect = 0.013
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
++ ++ +FV L+ + L +F + G V D ++++ SGRS+G +V F V
Sbjct: 235 EERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSV 294
Query: 251 NLVL 262
+
Sbjct: 295 QAAI 298
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.3 bits (75), Expect = 0.013
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 128 ENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 241
+ L+ FS++G + C + + S+G+GFV+F+ P
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 34.3 bits (75), Expect = 0.013
Identities = 23/75 (30%), Positives = 35/75 (46%)
Frame = +2
Query: 98 VGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPH 277
VG LS++ ++ +L +F I V+ +E RSRGFG+V F ++ L
Sbjct: 98 VGNLSFDLTENDLGDFFGEGVTSIRLVIDPLTE--RSRGFGYVEFETADTLSAALALSGE 155
Query: 278 QLDGRTIDPKPCNPR 322
L GR + PR
Sbjct: 156 DLMGRPVRITVAEPR 170
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.1 bits (72), Expect = 0.031
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDC-VVMKNSESGRSRGFGFVTF 232
+++VGGLS +L+ FSR+G V + ++ K++ G + F ++ F
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNF 54
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.7 bits (71), Expect = 0.041
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 62 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEV 166
P +DE ++VG + S E + ++FS+YG+V
Sbjct: 9 PGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQV 43
Score = 31.5 bits (68), Expect = 0.094
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 119 TSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
T + L+ FS +G ++ ++ SG S+G+GFV F
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 31.1 bits (67), Expect = 0.12
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Frame = +2
Query: 161 EVIDCVVMKNSESG---RSRGFGFVTFADPSLVNLVLQNGP-HQLDGRTIDPK------- 307
E++ CV ES + F++F DPS Q+ +L R + K
Sbjct: 130 EILSCVRTGPIESAWILPEKNCAFISFLDPSHATAFFQDAALKRLTIRGTEVKVGWGKNS 189
Query: 308 PCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLR 409
N L ++ G VFLG LP+ +TE ++R
Sbjct: 190 ASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIR 223
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 29.9 bits (64), Expect = 0.29
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 134 LQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ 265
L FS YG V+D V +K + + RG V F DPS + ++
Sbjct: 24 LYMLFSTYGTVVDIVALK---TPKMRGQAHVVFFDPSAAAIAMK 64
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 29.1 bits (62), Expect = 0.50
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
++VG LS+ T++E + FS+ GE+ ++ + + GF FV +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEY 80
>SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 200
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +2
Query: 335 PKRGGGYPKVFLGGLPSNVTETDLRXIFRTLWEGHGGGHYV*SXEEKVXGF 487
P+ GGYP + L E + + + + GHGGG S + V GF
Sbjct: 95 PQYNGGYPAILKNALDHLYHEWNGKPLLIVSYGGHGGGDCA-SQLKHVAGF 144
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.5 bits (58), Expect = 1.5
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKN------------SESGRSRGFGFVTFA 235
++V GLS + E L+ F Y + +++ E R RGFGFV+FA
Sbjct: 207 IYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFA 266
Query: 236 D 238
+
Sbjct: 267 N 267
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 146 FSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
FS+YG+VIDC ++ S + F F+ F
Sbjct: 386 FSKYGKVIDCKIIHQS---KKPAFAFLRF 411
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 307 AVQSSHSSKTE--TWRWIP*GVPWRAAIERYRNRS 405
+++ SHSS+ T IP VPWR A +YR S
Sbjct: 145 SLKRSHSSQLAHTTSSEIPGSVPWRRAGIKYRKNS 179
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
LF+ LS++ + E + F RYG V ++ + ++RG FV +
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQ---IRLGNTVQTRGTAFVVY 57
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.8 bits (54), Expect = 4.7
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Frame = +2
Query: 59 NPDMDDDEKGKLFV---GGLSWETSQENLQRYFSRYGEVIDCVVMKNS-ESGRSRGFGFV 226
N D+ D + L++ L W+ + + R RYG I C+ K GR + F
Sbjct: 154 NHDVADRQDNSLYLLNTSSLVWQKANASGARPSGRYGHTISCLGSKICLFGGRLLDYYFN 213
Query: 227 TFADPSLVNLVLQNGPHQLDGRTIDPKP 310
L NL + +L DP P
Sbjct: 214 DLVCFDLNNLNTSDSRWELASVVNDPPP 241
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +2
Query: 80 EKGKLFVGGLSWETS-QENLQ-----RYFSRYGEVIDCVVMKNSESGRSRG 214
+K +V GLS + + +EN+ YF +YG++I + K + + + G
Sbjct: 114 QKNLAYVNGLSPKVANEENINVLKGPEYFGQYGKIIKIAINKKAAANSANG 164
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESG 202
LF+GG++ + L+ F R+G V ++ N G
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHG 444
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 6.2
Identities = 16/74 (21%), Positives = 32/74 (43%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 259
E+ K+ V L + ++ ++ F + V + +GRS+G + F+ P
Sbjct: 53 EESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGDATRA 112
Query: 260 LQNGPHQLDGRTID 301
+ Q +GR +D
Sbjct: 113 YE----QYEGRLVD 122
>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 116 ETSQENLQRYFSRYGEVIDCVVMKNSES 199
E EN+ YF RY + + V+ N+ES
Sbjct: 356 EFLNENMLDYFQRYNQKLLTVLSSNAES 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,318,408
Number of Sequences: 5004
Number of extensions: 46841
Number of successful extensions: 167
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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