Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_A04
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   5.1  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   9.0  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 285 MAGPSTLSRAILALFKNRNVAVDTLRCSL 371
           +A P  +   ++   KN +V +DT RCS+
Sbjct: 185 LAVPQAIQFGVVYENKNGSVILDTARCSM 213


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 267 FCSTRLTSEGSANVTKPKPLER 202
           +C  R ++ GS+N   P+P+ +
Sbjct: 46  YCGRRPSTFGSSNEALPQPISK 67


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 267 FCSTRLTSEGSANVTKPKPLER 202
           +C  R ++ GS+N   P+P+ +
Sbjct: 46  YCGRRPSTFGSSNEALPQPISK 67


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 90  NYLLEDYHGKHPKRTCNAISHV 155
           NY   +Y+  + K+ C  I+H+
Sbjct: 88  NYNYSNYNNNNYKQLCYNINHI 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,647
Number of Sequences: 438
Number of extensions: 3506
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)