Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_A04
(587 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 113 6e-26
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 113 6e-26
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 112 2e-25
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 112 2e-25
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 112 2e-25
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 111 4e-25
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 101 3e-22
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 101 5e-22
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 99 1e-21
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 99 1e-21
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 97 6e-21
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 97 1e-20
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 97 1e-20
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 95 3e-20
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 83 1e-16
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 82 2e-16
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 80 9e-16
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 79 2e-15
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 79 2e-15
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 79 2e-15
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 79 2e-15
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 78 4e-15
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 78 5e-15
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 78 5e-15
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 75 4e-14
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 74 6e-14
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 74 6e-14
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 74 6e-14
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 74 6e-14
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 73 1e-13
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 73 1e-13
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 73 1e-13
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 73 1e-13
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 73 1e-13
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 73 1e-13
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 73 2e-13
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 73 2e-13
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 73 2e-13
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 72 2e-13
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 71 4e-13
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 71 4e-13
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 70 1e-12
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 70 1e-12
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 70 1e-12
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 70 1e-12
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 69 2e-12
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 69 3e-12
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 67 9e-12
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 66 1e-11
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 66 2e-11
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 64 5e-11
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 64 7e-11
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 62 4e-10
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 61 5e-10
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 61 6e-10
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 61 6e-10
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 61 6e-10
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 60 1e-09
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 60 1e-09
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 57 8e-09
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 56 1e-08
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 56 1e-08
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 56 2e-08
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 56 2e-08
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 56 2e-08
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 56 2e-08
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 55 3e-08
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 55 3e-08
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 55 3e-08
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 54 7e-08
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 52 2e-07
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 52 4e-07
At5g51300.2 68418.m06360 splicing factor-related contains simila... 51 5e-07
At5g51300.1 68418.m06359 splicing factor-related contains simila... 51 5e-07
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 51 5e-07
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 51 7e-07
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 50 9e-07
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 50 9e-07
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 50 1e-06
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 50 1e-06
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 50 1e-06
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 50 2e-06
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 49 3e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 48 4e-06
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 48 5e-06
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 48 5e-06
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 48 6e-06
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 48 6e-06
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 47 8e-06
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 47 8e-06
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 47 1e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 47 1e-05
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 47 1e-05
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 47 1e-05
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 47 1e-05
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 46 1e-05
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 46 2e-05
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 46 2e-05
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 46 2e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 46 2e-05
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 45 4e-05
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 44 6e-05
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 44 6e-05
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 44 6e-05
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 44 6e-05
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 44 6e-05
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 44 8e-05
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 44 8e-05
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 44 8e-05
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 44 8e-05
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 44 1e-04
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 44 1e-04
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 44 1e-04
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 43 1e-04
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 43 1e-04
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 43 1e-04
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 43 1e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 43 1e-04
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 43 2e-04
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 43 2e-04
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 42 3e-04
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 42 3e-04
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 42 4e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 42 4e-04
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 42 4e-04
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 42 4e-04
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 42 4e-04
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 41 5e-04
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 41 7e-04
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 41 7e-04
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 41 7e-04
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 41 7e-04
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 41 7e-04
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 40 0.001
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 40 0.001
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 40 0.001
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 40 0.001
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 40 0.001
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 39 0.002
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 39 0.002
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 39 0.002
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 39 0.002
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 39 0.003
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 39 0.003
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 38 0.004
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 38 0.004
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 38 0.004
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 38 0.004
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 38 0.005
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 38 0.005
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 37 0.009
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 37 0.009
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 37 0.009
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 37 0.009
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 37 0.011
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 36 0.020
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 36 0.020
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 36 0.020
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 36 0.026
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 35 0.035
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 35 0.046
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 35 0.046
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 34 0.061
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 34 0.081
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 34 0.081
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 34 0.081
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 33 0.11
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ... 33 0.11
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 33 0.14
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 33 0.14
At2g47310.1 68415.m05906 flowering time control protein-related ... 33 0.14
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 33 0.19
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 33 0.19
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 32 0.33
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 32 0.33
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 31 0.43
At3g01150.1 68416.m00019 polypyrimidine tract-binding protein, p... 31 0.43
At1g51520.2 68414.m05799 expressed protein contains a weak hit t... 30 1.00
At1g51520.1 68414.m05798 expressed protein contains a weak hit t... 30 1.00
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (... 30 1.3
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 29 2.3
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 29 3.0
At4g10610.1 68417.m01735 RNA-binding protein, putative 29 3.0
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 29 3.0
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 4.0
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 28 4.0
At1g05890.1 68414.m00617 zinc finger protein-related contains lo... 28 4.0
At5g20870.1 68418.m02478 glycosyl hydrolase family 17 protein si... 28 5.3
At5g13620.1 68418.m01578 expressed protein ; expression supporte... 28 5.3
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 28 5.3
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 28 5.3
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 28 5.3
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 28 5.3
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 27 7.0
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 27 7.0
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 27 7.0
At5g54210.1 68418.m06753 NLI interacting factor (NIF) family pro... 27 7.0
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 27 7.0
At4g35030.1 68417.m04969 protein kinase family protein contains ... 27 7.0
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 27 7.0
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 27 7.0
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi... 27 7.0
At5g24440.1 68418.m02880 RNA-binding protein, putative 27 9.3
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 27 9.3
At1g19600.1 68414.m02441 pfkB-type carbohydrate kinase family pr... 27 9.3
At1g04130.1 68414.m00402 tetratricopeptide repeat (TPR)-containi... 27 9.3
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 113 bits (273), Expect = 6e-26
Identities = 55/126 (43%), Positives = 81/126 (64%), Gaps = 13/126 (10%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 259
+ GKLF+GG+SW+T++E L+ YFS +GEVI+ V++K+ +GR+RGFGFV FADP++ +V
Sbjct: 4 DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63
Query: 260 LQNGPHQLDGRTIDPKPCNPRTLQ-------------KPKRGGGYPKVFLGGLPSNVTET 400
+ H +DGR ++ K PR Q P G K+F+GGLPS+VTE+
Sbjct: 64 ITE-KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTES 122
Query: 401 DLRXIF 418
D + F
Sbjct: 123 DFKTYF 128
Score = 65.3 bits (152), Expect = 3e-11
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K+FVGGL ++ + + YF ++G D VVM + + R RGFGF+T+ V VL
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 269 GPHQLDGRTIDPKPCNPRTLQK-PKR---GGGY 355
H+L+G+ ++ K P+ L P R G GY
Sbjct: 169 TFHELNGKMVEVKRAVPKELSPGPSRSPLGAGY 201
Score = 35.1 bits (77), Expect = 0.035
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXSX*QSDPRTLH 548
+F ++G +VV+MYD ++ G GF++++ E + + +T H
Sbjct: 127 YFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFH 171
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 113 bits (273), Expect = 6e-26
Identities = 55/126 (43%), Positives = 81/126 (64%), Gaps = 13/126 (10%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 259
+ GKLF+GG+SW+T++E L+ YFS +GEVI+ V++K+ +GR+RGFGFV FADP++ +V
Sbjct: 4 DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63
Query: 260 LQNGPHQLDGRTIDPKPCNPRTLQ-------------KPKRGGGYPKVFLGGLPSNVTET 400
+ H +DGR ++ K PR Q P G K+F+GGLPS+VTE+
Sbjct: 64 ITE-KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTES 122
Query: 401 DLRXIF 418
D + F
Sbjct: 123 DFKTYF 128
Score = 65.3 bits (152), Expect = 3e-11
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K+FVGGL ++ + + YF ++G D VVM + + R RGFGF+T+ V VL
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 269 GPHQLDGRTIDPKPCNPRTLQK-PKR---GGGY 355
H+L+G+ ++ K P+ L P R G GY
Sbjct: 169 TFHELNGKMVEVKRAVPKELSPGPSRSPLGAGY 201
Score = 35.1 bits (77), Expect = 0.035
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXSX*QSDPRTLH 548
+F ++G +VV+MYD ++ G GF++++ E + + +T H
Sbjct: 127 YFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFH 171
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 112 bits (269), Expect = 2e-25
Identities = 54/130 (41%), Positives = 82/130 (63%), Gaps = 15/130 (11%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 253
+ + GKLF+GG+SW+T +E L+ YFS YG+V++ V+M++ +GR+RGFGF+ FADP +
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 254 LVLQNGPHQLDGRTIDPKPCNPRT-------------LQKPKRGGG--YPKVFLGGLPSN 388
V+ + H +DGRT++ K PR L P GGG K+F+GGLPS+
Sbjct: 62 RVIMD-KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 389 VTETDLRXIF 418
+TE + + F
Sbjct: 121 ITEEEFKNYF 130
Score = 68.1 bits (159), Expect = 4e-12
Identities = 30/80 (37%), Positives = 48/80 (60%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K+FVGGL ++E + YF ++G + D VVM + + R RGFGF+TF V+ VL
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 269 GPHQLDGRTIDPKPCNPRTL 328
H+L+G+ ++ K P+ +
Sbjct: 171 TFHELNGKLVEVKRAVPKEI 190
Score = 37.1 bits (82), Expect = 0.009
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXSX*QSDPRTLH 548
+F ++G + +VV+MYD ++ G GF++F+ + + + +T H
Sbjct: 129 YFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFH 173
Score = 34.3 bits (75), Expect = 0.061
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
+F YG V+E VIM D+ ++ G GF+ F D
Sbjct: 25 YFSNYGDVVEAVIMRDRATGRARGFGFIVFAD 56
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 112 bits (269), Expect = 2e-25
Identities = 54/130 (41%), Positives = 82/130 (63%), Gaps = 15/130 (11%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 253
+ + GKLF+GG+SW+T +E L+ YFS YG+V++ V+M++ +GR+RGFGF+ FADP +
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 254 LVLQNGPHQLDGRTIDPKPCNPRT-------------LQKPKRGGG--YPKVFLGGLPSN 388
V+ + H +DGRT++ K PR L P GGG K+F+GGLPS+
Sbjct: 62 RVIMD-KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 389 VTETDLRXIF 418
+TE + + F
Sbjct: 121 ITEEEFKNYF 130
Score = 68.1 bits (159), Expect = 4e-12
Identities = 30/80 (37%), Positives = 48/80 (60%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K+FVGGL ++E + YF ++G + D VVM + + R RGFGF+TF V+ VL
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 269 GPHQLDGRTIDPKPCNPRTL 328
H+L+G+ ++ K P+ +
Sbjct: 171 TFHELNGKLVEVKRAVPKEI 190
Score = 37.1 bits (82), Expect = 0.009
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXSX*QSDPRTLH 548
+F ++G + +VV+MYD ++ G GF++F+ + + + +T H
Sbjct: 129 YFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFH 173
Score = 34.3 bits (75), Expect = 0.061
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
+F YG V+E VIM D+ ++ G GF+ F D
Sbjct: 25 YFSNYGDVVEAVIMRDRATGRARGFGFIVFAD 56
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 112 bits (269), Expect = 2e-25
Identities = 54/130 (41%), Positives = 82/130 (63%), Gaps = 15/130 (11%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 253
+ + GKLF+GG+SW+T +E L+ YFS YG+V++ V+M++ +GR+RGFGF+ FADP +
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 254 LVLQNGPHQLDGRTIDPKPCNPRT-------------LQKPKRGGG--YPKVFLGGLPSN 388
V+ + H +DGRT++ K PR L P GGG K+F+GGLPS+
Sbjct: 62 RVIMD-KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 389 VTETDLRXIF 418
+TE + + F
Sbjct: 121 ITEEEFKNYF 130
Score = 68.1 bits (159), Expect = 4e-12
Identities = 30/80 (37%), Positives = 48/80 (60%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K+FVGGL ++E + YF ++G + D VVM + + R RGFGF+TF V+ VL
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 269 GPHQLDGRTIDPKPCNPRTL 328
H+L+G+ ++ K P+ +
Sbjct: 171 TFHELNGKLVEVKRAVPKEI 190
Score = 37.1 bits (82), Expect = 0.009
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXSX*QSDPRTLH 548
+F ++G + +VV+MYD ++ G GF++F+ + + + +T H
Sbjct: 129 YFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFH 173
Score = 34.3 bits (75), Expect = 0.061
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
+F YG V+E VIM D+ ++ G GF+ F D
Sbjct: 25 YFSNYGDVVEAVIMRDRATGRARGFGFIVFAD 56
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 111 bits (266), Expect = 4e-25
Identities = 57/143 (39%), Positives = 86/143 (60%), Gaps = 22/143 (15%)
Frame = +2
Query: 56 MNPDMDDDEK----GKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGF 223
MNP+ E GKLF+GG+SW+T +E LQ YF +YG++++ V+M++ +GR+RGFGF
Sbjct: 1 MNPEEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGF 60
Query: 224 VTFADPSLVNLVLQNGPHQLDGRTIDPKPCNPRTLQK-------------PKRGGG---- 352
+ FADPS+ V+ + H +DGRT++ K PR Q+ P GG
Sbjct: 61 IVFADPSVAERVIMD-KHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGA 119
Query: 353 -YPKVFLGGLPSNVTETDLRXIF 418
K+F+GGLPS++TE + + F
Sbjct: 120 RTKKIFVGGLPSSITEAEFKNYF 142
Score = 67.7 bits (158), Expect = 5e-12
Identities = 30/80 (37%), Positives = 48/80 (60%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K+FVGGL ++ + YF ++G + D VVM + + R RGFGF+TF V++VL
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 182
Query: 269 GPHQLDGRTIDPKPCNPRTL 328
H+L+G+ ++ K P+ L
Sbjct: 183 TFHELNGKMVEVKRAVPKEL 202
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXSX*QSDPRTLH 548
+F ++G + +VV+MYD ++ G GF++F+ E S +T H
Sbjct: 141 YFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFH 185
Score = 36.3 bits (80), Expect = 0.015
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
+FG+YG ++E VIM D+ ++ G GF+ F D
Sbjct: 34 YFGKYGDLVEAVIMRDRTTGRARGFGFIVFAD 65
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 101 bits (243), Expect = 3e-22
Identities = 52/132 (39%), Positives = 77/132 (58%), Gaps = 15/132 (11%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 253
+ ++GKLF+GG+SW+T + L+ YFS +GEV+ VM+ +GR RGFGFV F+DP++++
Sbjct: 2 ESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVID 61
Query: 254 LVLQNGPHQLDGRTIDPKPCNPRTLQKPK-RGGGY--------------PKVFLGGLPSN 388
VLQ+ H +D R +D K R Q P R G + K+F+GGLP
Sbjct: 62 RVLQD-KHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPA 120
Query: 389 VTETDLRXIFRT 424
+T + R F T
Sbjct: 121 LTSDEFRAYFET 132
Score = 68.1 bits (159), Expect = 4e-12
Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K+FVGGL + + + YF YG V D V+M + + R RGFGFV+F V+LVL
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHK 170
Query: 269 GPHQLDGRTIDPKPCNPRTLQKP-KRGGGYPKVFLGGLP 382
H L+G+ ++ K P+ GGG GG P
Sbjct: 171 TFHDLNGKQVEVKRALPKDANPGIASGGGRGSGGAGGFP 209
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXS 518
+F YG V + VIM DQ ++ G GF+SF+ E S
Sbjct: 129 YFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDS 163
Score = 31.1 bits (67), Expect = 0.57
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
+F +G+V++V +M ++ + G GF++F D
Sbjct: 25 YFSNFGEVLQVTVMREKATGRPRGFGFVAFSD 56
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 101 bits (241), Expect = 5e-22
Identities = 53/130 (40%), Positives = 77/130 (59%), Gaps = 15/130 (11%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 253
D ++GKLFVGG+SWET ++ L+ +F+ YGEV +VM++ +GR RGFGFV F+DPS+++
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 254 LVLQNGPHQLDGRTIDPKPCNPR----------TLQKPKRGGG-----YPKVFLGGLPSN 388
VLQ H +D R +D K R L + GG K+F+GGLP
Sbjct: 62 RVLQE-KHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120
Query: 389 VTETDLRXIF 418
+T+ + R F
Sbjct: 121 LTDEEFRQYF 130
Score = 64.9 bits (151), Expect = 4e-11
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K+FVGGL + E ++YF YG V D +M + + R RGFGFV+F V+ VL
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK 170
Query: 269 GPHQLDGRTID-----PKPCNPRTLQKPKRGGG 352
H L G+ ++ PK NP + GGG
Sbjct: 171 TFHDLSGKQVEVKRALPKDANPGGGGRSMGGGG 203
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +3
Query: 354 TLRCSLAGCHRTLPKPISGXFFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXSX*QSD 533
T + + G TL +F YG V +V IMYDQ + G GF+SF+ E +
Sbjct: 109 TKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVL 168
Query: 534 PRTLH 548
+T H
Sbjct: 169 HKTFH 173
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
F YG+V + ++M D+ + G GF+ F D
Sbjct: 26 FTNYGEVSQAIVMRDKLTGRPRGFGFVIFSD 56
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 99 bits (238), Expect = 1e-21
Identities = 51/124 (41%), Positives = 76/124 (61%), Gaps = 11/124 (8%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 259
E KLF+GG+SWETS++ L+ YF +GEV++ V+MK+ +GR+RGFGFV FADP++ V
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 260 LQNGPHQLDGRTIDPKPCNPR-----------TLQKPKRGGGYPKVFLGGLPSNVTETDL 406
+ H +DG+ ++ K PR +LQ K+F+GGL S+VTE +
Sbjct: 64 VLL-KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEF 122
Query: 407 RXIF 418
+ F
Sbjct: 123 KKYF 126
Score = 66.5 bits (155), Expect = 1e-11
Identities = 28/80 (35%), Positives = 51/80 (63%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K+FVGGL+ ++ ++YF+++G + D VVM + + R RGFGF+++ V+ VLQ
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 269 GPHQLDGRTIDPKPCNPRTL 328
H+L+G+ ++ K P+ +
Sbjct: 167 TFHELNGKMVEVKLAVPKDM 186
Score = 39.1 bits (87), Expect = 0.002
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXSX*QSDPRTLH 548
+F ++G + +VV+MYD ++ G GF+S++ E + + +T H
Sbjct: 125 YFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFH 169
Score = 32.3 bits (70), Expect = 0.25
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
+F +G+V+E VIM D+ ++ G GF+ F D
Sbjct: 25 YFHSFGEVLEAVIMKDRATGRARGFGFVVFAD 56
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 99 bits (238), Expect = 1e-21
Identities = 51/124 (41%), Positives = 76/124 (61%), Gaps = 11/124 (8%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 259
E KLF+GG+SWETS++ L+ YF +GEV++ V+MK+ +GR+RGFGFV FADP++ V
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 260 LQNGPHQLDGRTIDPKPCNPR-----------TLQKPKRGGGYPKVFLGGLPSNVTETDL 406
+ H +DG+ ++ K PR +LQ K+F+GGL S+VTE +
Sbjct: 64 VLL-KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEF 122
Query: 407 RXIF 418
+ F
Sbjct: 123 KKYF 126
Score = 66.5 bits (155), Expect = 1e-11
Identities = 28/80 (35%), Positives = 51/80 (63%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K+FVGGL+ ++ ++YF+++G + D VVM + + R RGFGF+++ V+ VLQ
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 269 GPHQLDGRTIDPKPCNPRTL 328
H+L+G+ ++ K P+ +
Sbjct: 167 TFHELNGKMVEVKLAVPKDM 186
Score = 39.1 bits (87), Expect = 0.002
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXSX*QSDPRTLH 548
+F ++G + +VV+MYD ++ G GF+S++ E + + +T H
Sbjct: 125 YFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFH 169
Score = 32.3 bits (70), Expect = 0.25
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
+F +G+V+E VIM D+ ++ G GF+ F D
Sbjct: 25 YFHSFGEVLEAVIMKDRATGRARGFGFVVFAD 56
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 97.5 bits (232), Expect = 6e-21
Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Frame = +2
Query: 86 GKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ 265
GKLFVGG+SWET+ E YF ++GEV+D V+M + +G RGFGFVTFAD ++ VL+
Sbjct: 66 GKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE 125
Query: 266 NGPHQLDGRTIDPKPCNPRTLQKP--KRGGGYPKVFLGGLPSNVTETDLRXIF 418
H +D R +D K PR + K K+F+GGLP + E +L+ F
Sbjct: 126 E-DHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYF 177
Score = 63.7 bits (148), Expect = 9e-11
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K+FVGGL ++ L+ YF YG++I+ +M + +GRSRGFGFVTF V+ + +
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSD 217
Query: 269 GP-HQLDGRTIDPKPCNPR 322
G H+L + ++ K P+
Sbjct: 218 GKVHELGDKQVEIKRAEPK 236
Score = 34.7 bits (76), Expect = 0.046
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXS 518
+F YG ++E IMYD +S G GF++F+ E S
Sbjct: 176 YFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDS 210
Score = 33.9 bits (74), Expect = 0.081
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
+FG++G+V++ VIM D+ G GF++F D
Sbjct: 85 YFGKFGEVVDSVIMTDRITGNPRGFGFVTFAD 116
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 96.7 bits (230), Expect = 1e-20
Identities = 44/117 (37%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
D GK+F+GGL +T+ ++F +YGE+ D V+M++ +G+ RGFGF+TFADPS+V
Sbjct: 14 DGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVV 73
Query: 251 NLVLQNGPHQLDGRTIDPKPCNPRTL-QKPKRGGGYPKVFLGGLPSNVTETDLRXIF 418
+ V+++ H ++G+ ++ K P+ + K+F+GG+PS VTE +L+ F
Sbjct: 74 DKVIED-THVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFF 129
Score = 58.8 bits (136), Expect = 2e-09
Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 253
D + K+FVGG+ +++ L+ +F++YG V++ V+++ E+ RSRGFGFV F +V+
Sbjct: 105 DIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVD 164
Query: 254 LVLQNGPH-QLDGRTIDPKPCNPRTL--QKPKRGGGYPK 361
+L G + ++ K P+ + P G +P+
Sbjct: 165 ELLSKGNMIDMADTQVEIKKAEPKKSLNRSPPSYGSHPR 203
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 369 LAGCHRTLPKPISGXFFGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
+ G H+ + FG+YG++ + VIM D+ + G GF++F D
Sbjct: 23 IGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFAD 69
Score = 36.3 bits (80), Expect = 0.015
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +3
Query: 333 NRNVAVDTLRCSLAGCHRTLPKPISGXFFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDE 512
N++ + T + + G T+ + FF +YG V+E ++ D +S G GF+ F+ E
Sbjct: 101 NQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSE 160
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 96.7 bits (230), Expect = 1e-20
Identities = 44/117 (37%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
D GK+F+GGL +T+ ++F +YGE+ D V+M++ +G+ RGFGF+TFADPS+V
Sbjct: 14 DGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVV 73
Query: 251 NLVLQNGPHQLDGRTIDPKPCNPRTL-QKPKRGGGYPKVFLGGLPSNVTETDLRXIF 418
+ V+++ H ++G+ ++ K P+ + K+F+GG+PS VTE +L+ F
Sbjct: 74 DKVIED-THVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFF 129
Score = 58.4 bits (135), Expect = 3e-09
Identities = 25/66 (37%), Positives = 44/66 (66%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 253
D + K+FVGG+ +++ L+ +F++YG V++ V+++ E+ RSRGFGFV F +V+
Sbjct: 105 DIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVD 164
Query: 254 LVLQNG 271
+L G
Sbjct: 165 ELLSKG 170
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 369 LAGCHRTLPKPISGXFFGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
+ G H+ + FG+YG++ + VIM D+ + G GF++F D
Sbjct: 23 IGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFAD 69
Score = 36.3 bits (80), Expect = 0.015
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +3
Query: 333 NRNVAVDTLRCSLAGCHRTLPKPISGXFFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDE 512
N++ + T + + G T+ + FF +YG V+E ++ D +S G GF+ F+ E
Sbjct: 101 NQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSE 160
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 95.1 bits (226), Expect = 3e-20
Identities = 46/119 (38%), Positives = 74/119 (62%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 256
D GK+FVGGL+ ET+ ++F +YGE+ D V+MK+ ++G+ RGFGFVT+AD S+V+
Sbjct: 39 DSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDK 98
Query: 257 VLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRXIFRTLWE 433
V+Q+ H + G+ ++ K PR K+F+GG+PS+V + + + F E
Sbjct: 99 VIQDN-HIIIGKQVEIKRTIPRG-SMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGE 155
Score = 62.1 bits (144), Expect = 3e-10
Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
+D + K+FVGG+ + + +F ++GE+ + +M++ +GRSRGFGFVT+ +V
Sbjct: 125 NDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMV 184
Query: 251 NLVLQNGPH-QLDGRTIDPK---PCNPRTLQKPKRGGGYPKVFLGG 376
+ +L G +L G ++ K P P ++ P + G + GG
Sbjct: 185 DHLLAKGNRIELSGTQVEIKKAEPKKPNSVTTPSKRFGDSRSNFGG 230
Score = 32.3 bits (70), Expect = 0.25
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
FG+YG++ + VIM D+ + G GF+++ D
Sbjct: 62 FGKYGEITDSVIMKDRKTGQPRGFGFVTYAD 92
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 83.0 bits (196), Expect = 1e-16
Identities = 42/116 (36%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
KL V G+ W+ + L+ Y S++G++ DC+VMK+ +GRSRGFG+VTFA L+
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK- 62
Query: 269 GPHQLDGRTIDPKPCNPR-TLQKPKRGGGYPKVFLGGLPSNVTETDLRXIFRTLWE 433
G H L R ++ K P+ +++P + ++F+ +PS+V+E+D R F E
Sbjct: 63 GEHFLGNRILEVKVATPKEEMRQPAK--KVTRIFVARIPSSVSESDFRSHFERYGE 116
Score = 57.2 bits (132), Expect = 8e-09
Identities = 29/86 (33%), Positives = 46/86 (53%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K+FVG L E S ++L+ YF R+G + D + K+ + RGFGFVTFA+ + + V +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 269 GPHQLDGRTIDPKPCNPRTLQKPKRG 346
H++ G+ + P P G
Sbjct: 301 S-HEICGQEVAIDSATPLDEAGPSAG 325
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/85 (29%), Positives = 44/85 (51%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
++FV + S+ + + +F RYGE+ D + K+ S + RG GF+TF+ V ++++
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED 151
Query: 269 GPHQLDGRTIDPKPCNPRTLQKPKR 343
H L G T+ P+ P R
Sbjct: 152 -THDLGGTTVAVDRATPKEDDHPPR 175
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXS 518
F RYG++ ++ + D K+ G GF++F S
Sbjct: 111 FERYGEITDLYMPKDYNSKQHRGIGFITFSSADS 144
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
+FGR+G + + I D + G GF++F +
Sbjct: 259 YFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAE 290
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 82.2 bits (194), Expect = 2e-16
Identities = 37/95 (38%), Positives = 58/95 (61%)
Frame = +2
Query: 56 MNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 235
+N D K+FVGGL+WET E L+++F +YGE+++ VV+ + +GRS+G+GFVTF
Sbjct: 14 LNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFR 73
Query: 236 DPSLVNLVLQNGPHQLDGRTIDPKPCNPRTLQKPK 340
DP + +DGR + CN +L +P+
Sbjct: 74 DPEAARRACADPTPIIDGRRAN---CNLASLGRPR 105
Score = 33.9 bits (74), Expect = 0.081
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
F +YG+++E V++ D+ +S G GF++F D
Sbjct: 44 FEQYGEILEAVVIADKNTGRSKGYGFVTFRD 74
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 80.2 bits (189), Expect = 9e-16
Identities = 38/96 (39%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
Frame = +2
Query: 59 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
N + D + K+FVGGL+WET ++ ++RYF ++GE+++ VV+ + +GRS+G+GFVTF +
Sbjct: 13 NNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKE 72
Query: 239 PSLVNLVLQNGPHQLDGRTIDPKPCNPRTL--QKPK 340
QN +DGR + CN L QKP+
Sbjct: 73 AEAAMRACQNMNPVIDGRRAN---CNLACLGAQKPR 105
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 79.0 bits (186), Expect = 2e-15
Identities = 37/88 (42%), Positives = 56/88 (63%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
+ FVGGL+W T+ E+LQR FS++G+VID ++ + ESGRSRGFGFVTF D +++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEK----AMRD 62
Query: 269 GPHQLDGRTIDPKPCNPRTLQKPKRGGG 352
+++G+ +D + Q GGG
Sbjct: 63 AIEEMNGKELDGRVITVNEAQSRGSGGG 90
Score = 31.1 bits (67), Expect = 0.57
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDE 512
F ++G V++ I+ D+ +S G GF++F+DE
Sbjct: 26 FSQFGDVIDSKIINDRESGRSRGFGFVTFKDE 57
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 79.0 bits (186), Expect = 2e-15
Identities = 37/88 (42%), Positives = 56/88 (63%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
+ FVGGL+W T+ E+LQR FS++G+VID ++ + ESGRSRGFGFVTF D +++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEK----AMRD 62
Query: 269 GPHQLDGRTIDPKPCNPRTLQKPKRGGG 352
+++G+ +D + Q GGG
Sbjct: 63 AIEEMNGKELDGRVITVNEAQSRGSGGG 90
Score = 31.1 bits (67), Expect = 0.57
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDE 512
F ++G V++ I+ D+ +S G GF++F+DE
Sbjct: 26 FSQFGDVIDSKIINDRESGRSRGFGFVTFKDE 57
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 79.0 bits (186), Expect = 2e-15
Identities = 37/88 (42%), Positives = 56/88 (63%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
+ FVGGL+W T+ E+LQR FS++G+VID ++ + ESGRSRGFGFVTF D +++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEK----AMRD 62
Query: 269 GPHQLDGRTIDPKPCNPRTLQKPKRGGG 352
+++G+ +D + Q GGG
Sbjct: 63 AIEEMNGKELDGRVITVNEAQSRGSGGG 90
Score = 31.1 bits (67), Expect = 0.57
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDE 512
F ++G V++ I+ D+ +S G GF++F+DE
Sbjct: 26 FSQFGDVIDSKIINDRESGRSRGFGFVTFKDE 57
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 79.0 bits (186), Expect = 2e-15
Identities = 36/95 (37%), Positives = 57/95 (60%)
Frame = +2
Query: 56 MNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 235
+N D K+FVGGL+WET E L+R+F +YG++++ VV+ + +GRS+G+GFVTF
Sbjct: 14 LNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFR 73
Query: 236 DPSLVNLVLQNGPHQLDGRTIDPKPCNPRTLQKPK 340
DP + +DGR + CN +L + +
Sbjct: 74 DPEAARRACVDPTPIIDGRRAN---CNLASLGRSR 105
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
F +YG ++E V++ D+ +S G GF++F D
Sbjct: 44 FDQYGDILEAVVITDKNTGRSKGYGFVTFRD 74
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 78.2 bits (184), Expect = 4e-15
Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 7/114 (6%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 253
D K+FVGGL+WET + ++RYF ++GE+++ V++ + +G+S+G+GFVTF D
Sbjct: 13 DTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSAT 72
Query: 254 LVLQNGPHQLDGRTIDPKPCNPRTLQKPK----RG---GGYPKVFLGGLPSNVT 394
+ + +DGR + CN + +P+ RG GG P + GG S+ T
Sbjct: 73 RAVADPNPVIDGRKAN---CNIASFGRPRPSTPRGRGQGGSPSQYQGGGQSSYT 123
Score = 36.7 bits (81), Expect = 0.011
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXS 518
+F ++G+++E VI+ D+ KS G GF++F D S
Sbjct: 36 YFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDS 70
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 77.8 bits (183), Expect = 5e-15
Identities = 32/75 (42%), Positives = 50/75 (66%)
Frame = +2
Query: 68 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 247
M+D K+FVGGL+WET + +L+ YF ++G++++ VV+ + SGRS+G+GFVTF DP
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEA 60
Query: 248 VNLVLQNGPHQLDGR 292
+ +DGR
Sbjct: 61 AQKACVDPAPVIDGR 75
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 77.8 bits (183), Expect = 5e-15
Identities = 32/75 (42%), Positives = 50/75 (66%)
Frame = +2
Query: 68 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 247
M+D K+FVGGL+WET + +L+ YF ++G++++ VV+ + SGRS+G+GFVTF DP
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEA 60
Query: 248 VNLVLQNGPHQLDGR 292
+ +DGR
Sbjct: 61 AQKACVDPAPVIDGR 75
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 74.9 bits (176), Expect = 4e-14
Identities = 39/97 (40%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVL-Q 265
KLF+GGLSW T +L+ F+ +G+V+D V+ + E+GRSRGFGFV F D + +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 266 NGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGG 376
+L+GR I P N R GGG + GG
Sbjct: 96 MDGKELNGRHIRVNPANDRPSAPRAYGGGGGYSYGGG 132
Score = 30.7 bits (66), Expect = 0.75
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDE 512
F +G V++ ++ D+ +S G GF++F DE
Sbjct: 55 FAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 74.1 bits (174), Expect = 6e-14
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVL-Q 265
KLF+GGLSW T +L+ F+ +G+V+D V+ + E+GRSRGFGFV F D + +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 266 NGPHQLDGRTIDPKPCNPRTLQKPKRGGG 352
+L+GR I P N R GGG
Sbjct: 96 MDGKELNGRHIRVNPANDRPSAPRAYGGG 124
Score = 30.7 bits (66), Expect = 0.75
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDE 512
F +G V++ ++ D+ +S G GF++F DE
Sbjct: 55 FAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 74.1 bits (174), Expect = 6e-14
Identities = 32/74 (43%), Positives = 48/74 (64%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 253
D K+FVG L+W T+ ++L+RYF ++G+V+D V+ + GRS+G+GF+TF D
Sbjct: 8 DTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTV 67
Query: 254 LVLQNGPHQLDGRT 295
LQN +DGRT
Sbjct: 68 RALQNSKPIIDGRT 81
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXS 518
+F ++G+V++ ++ + +S G GF++F D S
Sbjct: 31 YFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVS 65
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 74.1 bits (174), Expect = 6e-14
Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 4/106 (3%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K+FVGGL+WET + ++RYF ++GE+++ V++ + +G+S+G+GFVTF + + +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 269 GPHQLDGRTIDPKPCN-PRTLQKPKRGGGY---PKVFLGGLPSNVT 394
+DGR + + R P RG G P + G PS T
Sbjct: 78 PNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSGGPSTYT 123
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 74.1 bits (174), Expect = 6e-14
Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 4/106 (3%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K+FVGGL+WET + ++RYF ++GE+++ V++ + +G+S+G+GFVTF + + +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 269 GPHQLDGRTIDPKPCN-PRTLQKPKRGGGY---PKVFLGGLPSNVT 394
+DGR + + R P RG G P + G PS T
Sbjct: 78 PNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSGGPSTYT 123
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 73.3 bits (172), Expect = 1e-13
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
KLF+GG+++ +++L+ F++YGEV+D V+ + E+GRSRGFGFVTF + +Q
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 269 -GPHQLDGRTIDPKPCNPRTLQKPKRGGGY 355
L GR + N RT GGGY
Sbjct: 101 LDGRDLHGRVVKVNYANDRTSGGGFGGGGY 130
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSF 503
F +YG+V++ ++ D+ +S G GF++F
Sbjct: 60 FTKYGEVVDTRVILDRETGRSRGFGFVTF 88
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 73.3 bits (172), Expect = 1e-13
Identities = 31/50 (62%), Positives = 41/50 (82%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
+ FVGGL+W T+ E+LQR FS++G+VID ++ + ESGRSRGFGFVTF D
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56
Score = 31.1 bits (67), Expect = 0.57
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDE 512
F ++G V++ I+ D+ +S G GF++F+DE
Sbjct: 26 FSQFGDVIDSKIINDRESGRSRGFGFVTFKDE 57
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 73.3 bits (172), Expect = 1e-13
Identities = 40/125 (32%), Positives = 67/125 (53%)
Frame = +2
Query: 68 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 247
+ D K+FVGGL+WET +E ++++F ++GE+++ VV+ + SGRS+G+GFVTF +
Sbjct: 7 LGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Query: 248 VNLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRXIFRTL 427
+ +DGR + CN +L + P GG +N +R + T+
Sbjct: 67 ARSACVDATPVIDGRRAN---CNLASLGLQRSKPSTPNHGGGGRINN-----MRVMMSTM 118
Query: 428 WEGHG 442
G G
Sbjct: 119 QTGFG 123
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 73.3 bits (172), Expect = 1e-13
Identities = 40/125 (32%), Positives = 67/125 (53%)
Frame = +2
Query: 68 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 247
+ D K+FVGGL+WET +E ++++F ++GE+++ VV+ + SGRS+G+GFVTF +
Sbjct: 7 LGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Query: 248 VNLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRXIFRTL 427
+ +DGR + CN +L + P GG +N +R + T+
Sbjct: 67 ARSACVDATPVIDGRRAN---CNLASLGLQRSKPSTPNHGGGGRINN-----MRVMMSTM 118
Query: 428 WEGHG 442
G G
Sbjct: 119 QTGFG 123
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 73.3 bits (172), Expect = 1e-13
Identities = 40/125 (32%), Positives = 67/125 (53%)
Frame = +2
Query: 68 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 247
+ D K+FVGGL+WET +E ++++F ++GE+++ VV+ + SGRS+G+GFVTF +
Sbjct: 7 LGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Query: 248 VNLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRXIFRTL 427
+ +DGR + CN +L + P GG +N +R + T+
Sbjct: 67 ARSACVDATPVIDGRRAN---CNLASLGLQRSKPSTPNHGGGGRINN-----MRVMMSTM 118
Query: 428 WEGHG 442
G G
Sbjct: 119 QTGFG 123
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 72.9 bits (171), Expect = 1e-13
Identities = 32/89 (35%), Positives = 50/89 (56%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 253
D + +FV GL W+T+ ENL+ F YGE+ +C V+ + ++GR++GFGFV F
Sbjct: 159 DSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGAR 218
Query: 254 LVLQNGPHQLDGRTIDPKPCNPRTLQKPK 340
L+N ++ RT+ P P KP+
Sbjct: 219 AALKNPEKRMYNRTVSCLPARPFNSGKPR 247
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 72.5 bits (170), Expect = 2e-13
Identities = 33/100 (33%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
D + + ++FVGGLSW+ ++ L+ F RYG++ +C +M ++GR RGFGF+TF D
Sbjct: 7 DGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGA 66
Query: 251 NLVLQN-GPHQLDGRTIDPKPCNPRT----LQKPKRGGGY 355
+ +++ +L + I P+ + + K+GGGY
Sbjct: 67 DDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGY 106
Score = 31.5 bits (68), Expect = 0.43
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXSX*QSDPRTLH*PPREAG 569
F RYGK+ E IM + + G GF++F D +D H RE G
Sbjct: 32 FDRYGKITECQIMVGRDTGRPRGFGFITFTDRRG---ADDAIKHMHGRELG 79
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 72.5 bits (170), Expect = 2e-13
Identities = 33/100 (33%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
D + + ++FVGGLSW+ ++ L+ F RYG++ +C +M ++GR RGFGF+TF D
Sbjct: 7 DGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGA 66
Query: 251 NLVLQN-GPHQLDGRTIDPKPCNPRT----LQKPKRGGGY 355
+ +++ +L + I P+ + + K+GGGY
Sbjct: 67 DDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGY 106
Score = 31.5 bits (68), Expect = 0.43
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXSX*QSDPRTLH*PPREAG 569
F RYGK+ E IM + + G GF++F D +D H RE G
Sbjct: 32 FDRYGKITECQIMVGRDTGRPRGFGFITFTDRRG---ADDAIKHMHGRELG 79
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 72.5 bits (170), Expect = 2e-13
Identities = 51/140 (36%), Positives = 76/140 (54%), Gaps = 25/140 (17%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 253
D ++ KLFVGG++ ETS+E L++YFSRYG V++ VV K +G+ RGFGFV FA+ V
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVV 61
Query: 254 LVLQNGPHQLDGRTIDPKPC--------NPRTLQKPKR-----GGGY------------P 358
L++ H + G+ +D + P ++Q +R GG
Sbjct: 62 KALRD-THFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTK 120
Query: 359 KVFLGGLPSNVTETDLRXIF 418
K+F+GGL SN TE + + F
Sbjct: 121 KIFVGGLSSNTTEEEFKSYF 140
Score = 72.1 bits (169), Expect = 2e-13
Identities = 32/78 (41%), Positives = 48/78 (61%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K+FVGGLS T++E + YF R+G D VVM + + R RGFGFVT+ V +V+Q+
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 269 GPHQLDGRTIDPKPCNPR 322
H+L + ++ K P+
Sbjct: 181 NFHELSDKRVEVKRAIPK 198
Score = 34.7 bits (76), Expect = 0.046
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXS 518
+F R+G+ +VV+M+D + G GF++++ E S
Sbjct: 139 YFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDS 173
Score = 31.5 bits (68), Expect = 0.43
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDE 512
+F RYG V+E V+ ++ K G GF+ F ++
Sbjct: 25 YFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAND 57
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 72.1 bits (169), Expect = 2e-13
Identities = 29/53 (54%), Positives = 42/53 (79%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
E ++FVGGLS E + +L+R FSR+G+++DC +M ++GRSRGFGF+TFAD
Sbjct: 5 EGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFAD 57
Score = 31.1 bits (67), Expect = 0.57
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXSX*QS 530
F R+G +++ IM ++ +S G GF++F D + +S
Sbjct: 27 FSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDES 64
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 256
D + + FVGGL+W T L+ F++YG+VID ++ + E+GRSRGFGFVTF D +
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 257 VLQ--NGPHQLDGRTI 298
++ NG LDGR+I
Sbjct: 65 AIEGMNG-QDLDGRSI 79
Score = 32.3 bits (70), Expect = 0.25
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDE 512
F +YG V++ I+ D+ +S G GF++F+DE
Sbjct: 28 FAQYGDVIDSKIINDRETGRSRGFGFVTFKDE 59
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 256
D + + FVGGL+W T L+ F++YG+VID ++ + E+GRSRGFGFVTF D +
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 257 VLQ--NGPHQLDGRTI 298
++ NG LDGR+I
Sbjct: 65 AIEGMNG-QDLDGRSI 79
Score = 32.3 bits (70), Expect = 0.25
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDE 512
F +YG V++ I+ D+ +S G GF++F+DE
Sbjct: 28 FAQYGDVIDSKIINDRETGRSRGFGFVTFKDE 59
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 70.1 bits (164), Expect = 1e-12
Identities = 31/78 (39%), Positives = 47/78 (60%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 253
+D + K++V GL W T E L YF R+GE++ V+ + + RS+GFGFVTF +
Sbjct: 5 NDRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESAT 64
Query: 254 LVLQNGPHQLDGRTIDPK 307
+N H +DGRT++ K
Sbjct: 65 RACENPNHTIDGRTVNCK 82
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXS 518
+F R+G+++ ++ D ++S G GF++F + S
Sbjct: 28 YFERFGEIVYAKVVCDGATQRSKGFGFVTFREVES 62
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 70.1 bits (164), Expect = 1e-12
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = +2
Query: 68 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 247
M +D + + F+GGL+W TS L+ F +YG +++ V+ + SGRSRGFGF+TF +
Sbjct: 1 MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 248 VN--LVLQNGPHQLDGRTIDPKPCNP 319
++ + NG LDGRTI P
Sbjct: 61 MDEAIAAMNG-MDLDGRTITVDKAQP 85
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 360 RCSLAGCHRTLPKPISGXFFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDE 512
RC + G T F +YG ++E ++ D+ +S G GF++F+++
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEK 58
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 70.1 bits (164), Expect = 1e-12
Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA-DPSLVNLVLQ 265
KLFVGGLSW T +L++ F+ +GEV + V+ + E+GRSRGFGFV+F+ + S N + +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 266 NGPHQLDGRTIDPKPCNPRTLQKPKR----GGGY 355
+L+GR I R+ P+ GGGY
Sbjct: 96 MDGKELNGRQIRVNLATERS-SAPRSSFGGGGGY 128
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 70.1 bits (164), Expect = 1e-12
Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA-DPSLVNLVLQ 265
KLFVGGLSW T +L++ F+ +GEV + V+ + E+GRSRGFGFV+F+ + S N + +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 266 NGPHQLDGRTIDPKPCNPRTLQKPKR----GGGY 355
+L+GR I R+ P+ GGGY
Sbjct: 96 MDGKELNGRQIRVNLATERS-SAPRSSFGGGGGY 128
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 68.9 bits (161), Expect = 2e-12
Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 256
D + + FVGGL+W T +++++R F+ +GEV D ++ + E+GRS+GF FVTF D +
Sbjct: 41 DNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRT 100
Query: 257 VL--QNGPHQLDGRTI 298
+ NG +LDGR I
Sbjct: 101 AIDRMNG-QELDGRNI 115
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 68.5 bits (160), Expect = 3e-12
Identities = 36/90 (40%), Positives = 49/90 (54%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K+FVGG+S+ T + L+ FS+YGEV+D ++ + E+GRSRGF FVTF + +Q
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 269 GPHQLDGRTIDPKPCNPRTLQKPKRGGGYP 358
L GR I R RG G P
Sbjct: 95 DGQDLHGRRIRVNYATERGSGFGGRGFGGP 124
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 66.9 bits (156), Expect = 9e-12
Identities = 40/92 (43%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF--ADPSLVNLVL 262
KLF+GGLS+ T+++ L FS+ G+V++ ++ + S RS+GFGFVTF AD + L+
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 263 QNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYP 358
NG QL+GRTI + Q GGGYP
Sbjct: 95 FNG-QQLNGRTIFVDYAKAK--QSLGGGGGYP 123
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 66.5 bits (155), Expect = 1e-11
Identities = 28/80 (35%), Positives = 51/80 (63%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K+FVGGL+ ++ ++YF+++G + D VVM + + R RGFGF+++ V+ VLQ
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 93
Query: 269 GPHQLDGRTIDPKPCNPRTL 328
H+L+G+ ++ K P+ +
Sbjct: 94 TFHELNGKMVEVKLAVPKDM 113
Score = 39.1 bits (87), Expect = 0.002
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXSX*QSDPRTLH 548
+F ++G + +VV+MYD ++ G GF+S++ E + + +T H
Sbjct: 52 YFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFH 96
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 359 KVFLGGLPSNVTETDLRXIF 418
K+F+GGL S+VTE + + F
Sbjct: 34 KIFVGGLASSVTEAEFKKYF 53
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 65.7 bits (153), Expect = 2e-11
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K+FVGGLS T E L+ F +G+++D VV+ + ESG SRGFGFVT+ + N +Q
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 269 GPH-QLDGRTIDPKPCN 316
+ +LDGR I P +
Sbjct: 97 MQNKELDGRIIGVHPAD 113
Score = 31.1 bits (67), Expect = 0.57
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFE 506
FG +GK+++ V++ D+ S G GF++++
Sbjct: 56 FGSFGKIVDAVVVLDRESGLSRGFGFVTYD 85
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 64.5 bits (150), Expect = 5e-11
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 256
D +++VG L W+ L+R FS +G+V+D V+ + E+GRSRGFGFV ++ + VN+
Sbjct: 204 DAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNV 263
Query: 257 VLQNGPHQ-LDGRTIDPKPCNPRT 325
+ Q L+GR I RT
Sbjct: 264 AIAALDGQNLEGRAIKVNVAEERT 287
Score = 51.2 bits (117), Expect = 5e-07
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 259
E+ KLFVG L ++ + L F + G V V+ N ++ +SRGFGFVT +
Sbjct: 111 EEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170
Query: 260 LQN-GPHQLDGRTIDPKPCNPRTLQKPKRGGGYP---KVFLGGLPSNVTETDLRXIF 418
++ +++GR + PR + ++ Y ++++G LP +V L +F
Sbjct: 171 VEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLF 227
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDE 512
F +GKV++ ++ D+ +S G GF+ +E
Sbjct: 227 FSEHGKVVDARVVSDRETGRSRGFGFVQMSNE 258
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 64.1 bits (149), Expect = 7e-11
Identities = 26/79 (32%), Positives = 49/79 (62%)
Frame = +2
Query: 56 MNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 235
+N D + K+FVGGL+W+T +E + +F +YG++++ V++ + + RS+G+GFVTF
Sbjct: 7 VNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFK 66
Query: 236 DPSLVNLVLQNGPHQLDGR 292
D ++ ++GR
Sbjct: 67 DAKAATRACEDSTPIINGR 85
Score = 35.1 bits (77), Expect = 0.035
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
F +YG ++E VI+ D+ ++S G GF++F+D
Sbjct: 37 FIKYGDILEAVIISDKLTRRSKGYGFVTFKD 67
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 61.7 bits (143), Expect = 4e-10
Identities = 28/73 (38%), Positives = 44/73 (60%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K++VGGL W T +E L +F R+GE+I V+ + E+ RS+G+GFVTF D ++
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 269 GPHQLDGRTIDPK 307
++GR + K
Sbjct: 74 PNPTIEGRITNCK 86
Score = 34.3 bits (75), Expect = 0.061
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXS 518
FF R+G+++ V ++ D+ +S G GF++F+D S
Sbjct: 32 FFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAES 66
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 61.3 bits (142), Expect = 5e-10
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD-PSLVNLVLQ 265
+LFV GLS T+ E LQ F+ +G+++D V+ + +SGRS+GFGFVT+A +
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 266 NGPHQLDGRTIDPKPCNPRTLQKP 337
LDG I P PR ++P
Sbjct: 95 MNAKFLDGWVIFVDPARPREPRRP 118
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 60.9 bits (141), Expect = 6e-10
Identities = 29/81 (35%), Positives = 51/81 (62%)
Frame = +2
Query: 50 MRMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVT 229
+R+ D D ++ KLF+ GL+ +T+ E L+ FS YG++ + +V+ + +G+S+G+GFVT
Sbjct: 64 VRLTADSDISQR-KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVT 122
Query: 230 FADPSLVNLVLQNGPHQLDGR 292
F L L+ ++DGR
Sbjct: 123 FMHVDGALLALKEPSKKIDGR 143
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K++V + ++ + L +F YG+V + + + +G+SRGF + L +
Sbjct: 168 KIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALAD 227
Query: 269 GPHQLDGRTIDPK 307
+DG+ ++ K
Sbjct: 228 PVKVIDGKHLNCK 240
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSF 503
F YG + E +++ D+ KS G GF++F
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 60.9 bits (141), Expect = 6e-10
Identities = 29/81 (35%), Positives = 51/81 (62%)
Frame = +2
Query: 50 MRMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVT 229
+R+ D D ++ KLF+ GL+ +T+ E L+ FS YG++ + +V+ + +G+S+G+GFVT
Sbjct: 64 VRLTADSDISQR-KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVT 122
Query: 230 FADPSLVNLVLQNGPHQLDGR 292
F L L+ ++DGR
Sbjct: 123 FMHVDGALLALKEPSKKIDGR 143
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K++V + ++ + L +F YG+V + + + +G+SRGF + L +
Sbjct: 168 KIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALAD 227
Query: 269 GPHQLDGRTIDPK 307
+DG+ ++ K
Sbjct: 228 PVKVIDGKHLNCK 240
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSF 503
F YG + E +++ D+ KS G GF++F
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 60.9 bits (141), Expect = 6e-10
Identities = 26/50 (52%), Positives = 36/50 (72%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
KLF+GGLSW +++L+ FS +GEV + + + SGRSRGFGFV FA+
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAE 91
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDE 512
F +G+V EV I YD+ +S G GF+ F +E
Sbjct: 61 FSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEE 92
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 60.1 bits (139), Expect = 1e-09
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
+++VG L W+ L++ FS +G+V++ V+ + E+GRSRGFGFVT +D +N +
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 269 GPHQ-LDGRTIDPKPCNPRTLQKPKRG 346
Q L+GR I R P+RG
Sbjct: 305 LDGQNLEGRAIRVNVAEER---PPRRG 328
Score = 56.4 bits (130), Expect = 1e-08
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
+ E+ KLFVG L+++ + + L F + G V V+ N E+ +SRGFGFVT +
Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204
Query: 251 NLVLQN-GPHQLDGRTIDPKPCNPRTLQKPKRGGGYP---KVFLGGLPSNVTETDLRXIF 418
++ + L+GR + PR + + Y +V++G LP +V L +F
Sbjct: 205 ETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF 264
Score = 32.3 bits (70), Expect = 0.25
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
F +GKV+E ++YD+ +S G GF++ D
Sbjct: 264 FSEHGKVVEARVVYDRETGRSRGFGFVTMSD 294
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 59.7 bits (138), Expect = 1e-09
Identities = 30/92 (32%), Positives = 50/92 (54%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN 253
D + +FV G W+T+QENL+ F YGE+ +C V+ + ++GR +G+GFV F
Sbjct: 404 DIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAR 463
Query: 254 LVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGG 349
L+ ++ R + CN + +KP + G
Sbjct: 464 EALKRPEKRMYNRIV---VCNLAS-EKPGKAG 491
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 57.2 bits (132), Expect = 8e-09
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
+++VG LS T+ + L+ FS YG V+D +VM++ + RSRGFGFVT++ S +
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 269 -GPHQLDGRTIDPK 307
+L+GR + K
Sbjct: 64 MDGKELNGRRVSVK 77
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSF 503
F YG V++ ++M D+ +S G GF+++
Sbjct: 23 FSGYGNVVDAIVMRDRYTDRSRGFGFVTY 51
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 56.4 bits (130), Expect = 1e-08
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
K+FV GL WET++E L F YGE+ +C V+ + +G+++GFGFV F
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 387 TLPKPISGXFFGRYGKVMEVVIMYDQXKKKSXGXGFLSFE 506
T + + G F G YG++ E ++ D+ K+ G GF+ F+
Sbjct: 115 TTRETLVGVFEG-YGEIEECTVVIDKATGKAKGFGFVMFK 153
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 56.4 bits (130), Expect = 1e-08
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
K+FV GL WET++E L F YGE+ +C V+ + +G+++GFGFV F
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 387 TLPKPISGXFFGRYGKVMEVVIMYDQXKKKSXGXGFLSFE 506
T + + G F G YG++ E ++ D+ K+ G GF+ F+
Sbjct: 115 TTRETLVGVFEG-YGEIEECTVVIDKATGKAKGFGFVMFK 153
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 56.0 bits (129), Expect = 2e-08
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
KLFVG LSW + E+L F G+V+ V+ + ++GRSRG+GFV ++ + + L++
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 269 -GPHQLDGRTI 298
+L+GR I
Sbjct: 238 LDGFELEGRAI 248
Score = 44.8 bits (101), Expect = 4e-05
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
KL+ G L + L + + V+ N ++G+SRGF FVT ++ N+++ N
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 269 --GPHQLDGRTIDPKPCN-PRTLQKPKRGGGYPKVFLGGLPSNVTETDLRXIFR 421
G L GR + + P+ ++P K+F+G L VT L FR
Sbjct: 146 LDGTEYL-GRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFR 198
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 55.6 bits (128), Expect = 2e-08
Identities = 25/74 (33%), Positives = 40/74 (54%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
+D K+FV GL W+T E L F +YGE+ DC + + SG+S+G+GF+ + S
Sbjct: 135 EDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGA 194
Query: 251 NLVLQNGPHQLDGR 292
L+ ++ R
Sbjct: 195 RNALKQPQKKIGSR 208
Score = 31.5 bits (68), Expect = 0.43
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K++V + E + L +FS++GE+ + + + +GR +GF + L+
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 269 GPHQ 280
PH+
Sbjct: 306 -PHK 308
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 55.6 bits (128), Expect = 2e-08
Identities = 25/74 (33%), Positives = 40/74 (54%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
+D K+FV GL W+T E L F +YGE+ DC + + SG+S+G+GF+ + S
Sbjct: 135 EDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGA 194
Query: 251 NLVLQNGPHQLDGR 292
L+ ++ R
Sbjct: 195 RNALKQPQKKIGSR 208
Score = 31.5 bits (68), Expect = 0.43
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K++V + E + L +FS++GE+ + + + +GR +GF + L+
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 269 GPHQ 280
PH+
Sbjct: 306 -PHK 308
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 55.6 bits (128), Expect = 2e-08
Identities = 25/74 (33%), Positives = 40/74 (54%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
+D K+FV GL W+T E L F +YGE+ DC + + SG+S+G+GF+ + S
Sbjct: 135 EDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGA 194
Query: 251 NLVLQNGPHQLDGR 292
L+ ++ R
Sbjct: 195 RNALKQPQKKIGSR 208
Score = 31.5 bits (68), Expect = 0.43
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K++V + E + L +FS++GE+ + + + +GR +GF + L+
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 269 GPHQ 280
PH+
Sbjct: 306 -PHK 308
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 55.2 bits (127), Expect = 3e-08
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ- 265
+L+VG LSW L+ F+ G+V++ V+ + +SGRS+GFGFVT + V +
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 266 -NGPHQLDGRTI 298
NG LDGR I
Sbjct: 310 LNGA-DLDGRQI 320
Score = 52.8 bits (121), Expect = 2e-07
Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ- 265
KLFVG LS+ L + F G V V+ + +GRSRGFGFVT + + V Q
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 266 -NGPHQLDGRTI-----DPKPCNPRTLQKPKRGGGYPKVFLGGLPS 385
NG ++ +GR + P P + + R GGY GG S
Sbjct: 160 FNG-YEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGS 204
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLS 500
F GKV+E ++YD+ +S G GF++
Sbjct: 269 FNEQGKVVEARVIYDRDSGRSKGFGFVT 296
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 55.2 bits (127), Expect = 3e-08
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ- 265
+L+VG LSW L+ F+ G+V++ V+ + +SGRS+GFGFVT + V +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 266 -NGPHQLDGRTI 298
NG LDGR I
Sbjct: 318 LNGA-DLDGRQI 328
Score = 52.8 bits (121), Expect = 2e-07
Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ- 265
KLFVG LS+ L + F G V V+ + +GRSRGFGFVT + + V Q
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 266 -NGPHQLDGRTI-----DPKPCNPRTLQKPKRGGGYPKVFLGGLPS 385
NG ++ +GR + P P + + R GGY GG S
Sbjct: 160 FNG-YEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGS 204
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLS 500
F GKV+E ++YD+ +S G GF++
Sbjct: 277 FNEQGKVVEARVIYDRDSGRSKGFGFVT 304
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 55.2 bits (127), Expect = 3e-08
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF-ADPSLVNLVLQ 265
+++VG LSW L+ FS G+V++ V+ + +SGRS+GFGFVT+ + + N +
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 266 NGPHQLDGRTI 298
LDGR I
Sbjct: 265 LDGADLDGRQI 275
Score = 50.0 bits (114), Expect = 1e-06
Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ- 265
KLFVG L + L + F G V V+ + +GRSRGFGFVT + S V Q
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 266 -NGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPK 361
NG ++LDGR + P PKR G+ +
Sbjct: 152 FNG-YELDGRPLRVNAGPP----PPKREDGFSR 179
Score = 31.1 bits (67), Expect = 0.57
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFE 506
F GKV+E ++YD+ +S G GF++++
Sbjct: 224 FSEQGKVVEARVIYDRDSGRSKGFGFVTYD 253
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 54.0 bits (124), Expect = 7e-08
Identities = 22/52 (42%), Positives = 34/52 (65%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 244
K+FV GL W+T ++L F +YGE+ DC + + SG+S+G+GF+ F S
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRS 180
Score = 34.3 bits (75), Expect = 0.061
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K++V +S + + L +FSR+GE+ + + + +GR +GF + L+
Sbjct: 228 KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEE 287
Query: 269 GPHQ 280
PH+
Sbjct: 288 -PHK 290
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 52.8 bits (121), Expect = 2e-07
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA--DPSLVNLVLQ 265
LFV GLS T+ E L+ F+++GEV D V+ + SG S+GFGFV +A + S +
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGM 117
Query: 266 NGPHQLDGRTIDPKPCNPR 322
+G LDG I + PR
Sbjct: 118 DGKF-LDGWVIFAEYARPR 135
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/73 (38%), Positives = 42/73 (57%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 271
L++ L + E L+ FS YG V C VM NS+ G SRGFGFV +++P L ++
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMK-- 386
Query: 272 PHQLDGRTIDPKP 310
+++G+ I KP
Sbjct: 387 --EMNGKMIGRKP 397
Score = 47.2 bits (107), Expect = 8e-06
Identities = 21/58 (36%), Positives = 35/58 (60%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ 265
++V L E + + L++ F +YG++ VVMK+ +SG SR FGFV F P + ++
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVE 283
Score = 41.1 bits (92), Expect = 5e-04
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Frame = +2
Query: 83 KGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVL 262
KG +F+ L + L FS +G ++ C V + GRS+G+GFV F +
Sbjct: 131 KGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVV-GRSKGYGFVQFEKEETAQAAI 189
Query: 263 Q--NGPHQLDGRTIDPKPCNPRTLQKPKRGG--GYPKVFLGGLPSNVTETDLRXIF 418
NG D + + + + G + V++ LP +T+ +L+ F
Sbjct: 190 DKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTF 245
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +3
Query: 384 RTLPKPISGX----FFGRYGKVMEVVIMYDQXKKKSXGXGFLSF 503
+ LPK I+ FG+YG + V+M DQ S GF++F
Sbjct: 230 KNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNF 272
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 51.6 bits (118), Expect = 4e-07
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVL-- 262
KL++GGLS T + +L+ FS + V + VM N +GRSRG+GFV F N +
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 263 QNGPHQLDGRTI 298
NG +L+G I
Sbjct: 92 MNG-QELNGFNI 102
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 51.2 bits (117), Expect = 5e-07
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Frame = +2
Query: 62 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 241
P + DE L++G L + L FS +GE++ V+K+ +G S+G+GFV +AD
Sbjct: 473 PSKEYDETN-LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADV 531
Query: 242 SLVNLVLQ--NGPHQLDGRTI 298
+ N +Q NG ++ +GRT+
Sbjct: 532 QMANTAVQAMNG-YRFEGRTL 551
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 51.2 bits (117), Expect = 5e-07
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Frame = +2
Query: 62 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 241
P + DE L++G L + L FS +GE++ V+K+ +G S+G+GFV +AD
Sbjct: 473 PSKEYDETN-LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADV 531
Query: 242 SLVNLVLQ--NGPHQLDGRTI 298
+ N +Q NG ++ +GRT+
Sbjct: 532 QMANTAVQAMNG-YRFEGRTL 551
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 51.2 bits (117), Expect = 5e-07
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
++F+GGL + +E+L+ GE+ + +MK+ +SG S+G+ FV F + ++
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 269 -GPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRXIFRTLWEG 436
+ G+TI C +L + K ++F+G +P N TE + R + + G
Sbjct: 177 LHSKEFKGKTI---RC---SLSETKN-----RLFIGNIPKNWTEDEFRKVIEDVGPG 222
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 50.8 bits (116), Expect = 7e-07
Identities = 22/74 (29%), Positives = 42/74 (56%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 256
+ + K++VG L W T + L+ +FS++G ++ V+ + ++GR+R F F++F +
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 268
Query: 257 VLQNGPHQLDGRTI 298
L Q +GR I
Sbjct: 269 ALSFNGTQYEGRRI 282
Score = 33.5 bits (73), Expect = 0.11
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +2
Query: 146 FSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN-GPHQLDGRTIDPK---PC 313
F +G VI V +N ++G SRG G+VT + + + + ++ GR + +
Sbjct: 128 FQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDM 187
Query: 314 NPRTLQKPKRGGGYPKVFL 370
NP T + P+ PK L
Sbjct: 188 NPGTRRNPEVLNSTPKKIL 206
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 50.4 bits (115), Expect = 9e-07
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 271
++VGG+ ++ ++ +L FS+YGE++D ++++ +G+S+GF F+ + D L + N
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 272 PHQLD-GRTIDPKPC 313
L GRTI C
Sbjct: 98 NGALVLGRTIKVDHC 112
Score = 34.3 bits (75), Expect = 0.061
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXS 518
F +YG++++V ++ D+ KS G FL++ED+ S
Sbjct: 56 FSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 50.4 bits (115), Expect = 9e-07
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFS-RYGEVIDCVVMKNSESGRSRGFGFVTFADPS-LVNLVLQ 265
+FVG LS + S L FS +Y V V+ ++ +GRS+G+GFV F D + + +
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 266 NGPHQLDGRTIDPKPCNPRTLQKPKRGGGY--------PK-------VFLGGLPSNVTET 400
+ R + P PR ++ GGY P+ +F+GGL S+VT+
Sbjct: 259 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDE 318
Query: 401 DLRXIFRTLWE 433
DL+ F E
Sbjct: 319 DLKQPFNEFGE 329
Score = 30.3 bits (65), Expect = 1.00
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
+FVGGL + E+L++ F+ +GE++ + +G GFV F +
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV------GKGCGFVQFVN 348
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 259
E+G+L+VG L + + L + F G V+D ++ + + RSRGFGFVT
Sbjct: 114 EEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEA 173
Query: 260 LQN-GPHQLDGRTI 298
+Q Q+ GRT+
Sbjct: 174 MQMFNSSQIGGRTV 187
Score = 44.8 bits (101), Expect = 4e-05
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN- 253
D K++ G L W + + L+ F V+ V+ +GRSRGFGF++F V
Sbjct: 216 DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 254 -LVLQNGPHQLDGRTI 298
L NG +++GR +
Sbjct: 276 ALATMNGV-EVEGRAL 290
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLS 500
FG G V++V I+YD+ +S G GF++
Sbjct: 136 FGEAGTVVDVQIVYDKVTDRSRGFGFVT 163
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 271
LF G LS++ ++ +++ +F GEV+D V + + + G +G+G + FA P L+
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVD-VRLSSFDDGSFKGYGHIEFASPEEAQKALEMN 444
Query: 272 PHQLDGRTIDPKPCN----PRTLQKPKRGGGYPK--VFLGGLPSNVTETDLRXIFRT 424
L GR + N PR ++G G +++ G S++ E +++ R+
Sbjct: 445 GKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRS 501
Score = 33.9 bits (74), Expect = 0.081
Identities = 22/76 (28%), Positives = 36/76 (47%)
Frame = +2
Query: 95 FVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGP 274
F L + ++ L+ +FS+ GEV V + E+G SRGF ++ S + LQ
Sbjct: 486 FSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLT--SGFDEALQLSG 543
Query: 275 HQLDGRTIDPKPCNPR 322
++ G I + PR
Sbjct: 544 SEIGGGNIHVEESRPR 559
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 50.0 bits (114), Expect = 1e-06
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Frame = +2
Query: 83 KGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVL 262
K KLFV L W S ++ F + G V + +++ + G++RGF FVT A +
Sbjct: 94 KRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEEAQAAI 152
Query: 263 QN-GPHQLDGRTID---------PKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRX 412
Q+ GR I P P +P L P G K+++ L T LR
Sbjct: 153 DKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRE 212
Query: 413 IF 418
+F
Sbjct: 213 LF 214
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQENLQRYFSR--YGEVIDCVVMKNSESGRSRGFGFVTFAD-PSL 247
D + KL+V L+W+ +L+ F+ + V VV + E GRS G+GFV+FA
Sbjct: 191 DTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPE-GRSSGYGFVSFATREEA 249
Query: 248 VNLVLQNGPHQLDGRTIDPK 307
N + + ++ GR I K
Sbjct: 250 ENAITKLNGKEIMGRPITLK 269
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/48 (43%), Positives = 34/48 (70%)
Frame = +2
Query: 95 FVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
FV GL +T +++L FS++G VID ++ + ++G+SR FGFVTF +
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEE 57
Score = 34.7 bits (76), Expect = 0.046
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +3
Query: 363 CSLAGCHRTLPKPISGXFFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXS 518
C + G + + F ++G V++ I+YD+ KS GF++FE+E S
Sbjct: 9 CFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKS 60
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/71 (33%), Positives = 45/71 (63%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
+LFV LS T+ ++L++ FS +G++ + ++++SE+ R +GFGF+TF L++
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 269 GPHQLDGRTID 301
LDG+ +D
Sbjct: 68 ----LDGKIVD 74
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 48.4 bits (110), Expect = 4e-06
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Frame = +2
Query: 53 RMNPDMDDD-EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVT 229
++ P+ D + ++ +F ++ ++ ++ +FSR G+V D ++ + S RSRG G+V
Sbjct: 170 KVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVE 229
Query: 230 FADPSLVNLVLQNGPHQLDGRTIDPKPCNPR------TLQKPKRG-------GGYPKVFL 370
F D V + + L G+ + KP T G GG ++++
Sbjct: 230 FYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYV 289
Query: 371 GGLPSNVTETDLRXIFRT 424
G L N++E DLR +F +
Sbjct: 290 GNLHINMSEDDLRKVFES 307
Score = 44.8 bits (101), Expect = 4e-05
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD-PSLVNLVLQ 265
+L+VG L S+++L++ F +G V + V + E+G +GFGFV FA N +
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSV-ELVQVPRDETGLCKGFGFVQFARLEDARNALNL 344
Query: 266 NGPHQLDGRTIDPKPCNPRTLQKPKRG 346
NG ++ GR I +T + P+ G
Sbjct: 345 NGQLEIAGRAIKVSAVTDQT-EVPEAG 370
Score = 34.7 bits (76), Expect = 0.046
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXS 518
FF R GKV +V I+ D+ ++S G G++ F D S
Sbjct: 201 FFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMS 235
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 48.0 bits (109), Expect = 5e-06
Identities = 27/79 (34%), Positives = 39/79 (49%)
Frame = +2
Query: 53 RMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
R D D L V L + QE+L+R F ++G V D + ++ +G RGFGF+ F
Sbjct: 26 RFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQF 85
Query: 233 ADPSLVNLVLQNGPHQLDG 289
DP+ HQ+DG
Sbjct: 86 MDPA----DAAEAKHQMDG 100
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 48.0 bits (109), Expect = 5e-06
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFS-RYGEVIDCVVMKNSESGRSRGFGFVTFADPS-LVNLVLQ 265
+FVG L+ + S L FS +Y V V+ ++ +GRS+G+GFV F D + + +
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 266 NGPHQLDGRTIDPKPCNPRTLQKPKRGGGY---------------PKVFLGGLPSNVTET 400
+ R + P PR ++ GGY +F+GGL S+VT+
Sbjct: 261 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDE 320
Query: 401 DLRXIFRTLWE 433
DL+ F E
Sbjct: 321 DLKQPFSEFGE 331
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 161 EVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ 265
E++ V++N +G S G+GFV F + + VLQ
Sbjct: 130 EIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Score = 31.5 bits (68), Expect = 0.43
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
+FVGGL + E+L++ FS +GE++ + +G GFV F +
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV------GKGCGFVQFVN 350
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 47.6 bits (108), Expect = 6e-06
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Frame = +2
Query: 59 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
N + D KL+VGG+ ++++++ ++ YF G +I E G G F+TF
Sbjct: 152 NKEEDGVVPNKLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDT 211
Query: 239 PSLVNLVLQNGPHQLDGR--TID-----PKPCNPRTLQK----PKRGGGYPKVFLGGLPS 385
L + R TI P PR P+ GY +V++G L
Sbjct: 212 EDGAKRALAFDRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAW 271
Query: 386 NVTETDLRXIF 418
+ TE D+R +F
Sbjct: 272 DTTERDIRKLF 282
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = +2
Query: 62 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVM-KNSESGRSRGFGFVTFAD 238
P+M D ++++G L+W+T++ ++++ FS VI+ V + KN E+G +G+ V F D
Sbjct: 255 PEMVDGYN-RVYIGNLAWDTTERDIRKLFSDC--VINSVRLGKNKETGEFKGYAHVDFKD 311
Query: 239 PSLVNLVLQNGPHQLDGRTI 298
V + L+ + GR +
Sbjct: 312 SVSVAIALKLDQQVICGRPV 331
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 47.6 bits (108), Expect = 6e-06
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 271
LFVG LS T+++ L+ S+YG + + ++++ +G SRG+GFV + + ++
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 272 PHQL-DGRTI 298
H L DGR I
Sbjct: 126 HHSLIDGREI 135
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 47.2 bits (107), Expect = 8e-06
Identities = 30/104 (28%), Positives = 54/104 (51%)
Frame = +2
Query: 62 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 241
PD+ D L V +++ T+ ++L F++YG+V+D + ++ +G SRGF FV +
Sbjct: 10 PDISDTYS--LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK 67
Query: 242 SLVNLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLG 373
+ ++ +LDGR +D + T+Q K G K+ G
Sbjct: 68 DEAHKAVE----RLDGRVVDGREI---TVQFAKYGPNAEKISKG 104
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 47.2 bits (107), Expect = 8e-06
Identities = 30/104 (28%), Positives = 54/104 (51%)
Frame = +2
Query: 62 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 241
PD+ D L V +++ T+ ++L F++YG+V+D + ++ +G SRGF FV +
Sbjct: 10 PDISDTYS--LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK 67
Query: 242 SLVNLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLG 373
+ ++ +LDGR +D + T+Q K G K+ G
Sbjct: 68 DEAHKAVE----RLDGRVVDGREI---TVQFAKYGPNAEKISKG 104
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 46.8 bits (106), Expect = 1e-05
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 16/125 (12%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSR-YGEVIDCVVMKNSESGRSRGFGFVTFADPS--LVNLVL 262
+FVG L+ E + L F YG V V+ + +GRS+G+GFV FAD + + +
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 263 QNGPH----------QLDGRTIDPKPCNPRTLQKPKRGGGYPK---VFLGGLPSNVTETD 403
NG + + + +P + Q G P +F+GGL +NVT+ +
Sbjct: 216 MNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDE 275
Query: 404 LRXIF 418
L+ IF
Sbjct: 276 LKSIF 280
Score = 44.4 bits (100), Expect = 6e-05
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 4/137 (2%)
Frame = +2
Query: 59 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
NP D K L++G L + + F++ GE V++N +G+S G+GF+ F
Sbjct: 52 NPGSASDVKS-LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVS 110
Query: 239 PSLVNLVLQ--NG-PHQLDGRTIDPKPCNPRTLQKP-KRGGGYPKVFLGGLPSNVTETDL 406
S+ VLQ NG P +T +K + G +F+G L VT+ L
Sbjct: 111 HSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYML 170
Query: 407 RXIFRTLWEGHGGGHYV 457
F+ ++ G V
Sbjct: 171 SDTFKNVYGSVKGAKVV 187
Score = 31.9 bits (69), Expect = 0.33
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Frame = +2
Query: 59 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
N +D +FVGGL + + L+ F ++GE++ + GFV +A+
Sbjct: 251 NAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRC------GFVQYAN 304
Query: 239 PSLVN--LVLQNGPHQLDGRTID---PKPCNPRTLQKPKRGGGY 355
+ L + NG QL G++I + N ++ Q GGGY
Sbjct: 305 KASAEHALSVLNGT-QLGGQSIRLSWGRSPNKQSDQAQWNGGGY 347
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 402 ISGXFFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDE 512
+S F YG V ++ D+ +S G GF+ F DE
Sbjct: 170 LSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADE 206
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF--ADPSLVNLVLQ 265
++V L+ T+ ++L+ F YG++ VVMK+ E G+S+GFGFV F AD + +
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 89
Query: 266 NGPHQLDGR 292
NG H+ D +
Sbjct: 90 NG-HKFDDK 97
Score = 44.8 bits (101), Expect = 4e-05
Identities = 28/80 (35%), Positives = 39/80 (48%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
D + L+V L S E L+ FS +G V VM++ +G S+G GFV FA P
Sbjct: 127 DKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEA 185
Query: 251 NLVLQNGPHQLDGRTIDPKP 310
+ QL G+ I+ KP
Sbjct: 186 TEAMS----QLSGKMIESKP 201
Score = 33.9 bits (74), Expect = 0.081
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
FG YGK+ V+M D + KS G GF++FE+
Sbjct: 49 FGEYGKITSAVVMKD-GEGKSKGFGFVNFEN 78
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 46.8 bits (106), Expect = 1e-05
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
KLFVG + ++E ++ YF ++G V++ ++K+ +G+ +G FV +A + ++
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 269 GPHQ--LDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRXIF 418
+Q L G T P ++ + G K+F+G L TE ++ IF
Sbjct: 181 LHNQITLPGGT-GPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIF 231
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 46.8 bits (106), Expect = 1e-05
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
KLFVG + ++E ++ YF ++G V++ ++K+ +G+ +G FV +A + ++
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 269 GPHQ--LDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRXIF 418
+Q L G T P ++ + G K+F+G L TE ++ IF
Sbjct: 181 LHNQITLPGGT-GPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIF 231
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 46.8 bits (106), Expect = 1e-05
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Frame = +2
Query: 62 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 241
P K KL+V GLS+ T+++ L+ F ++G +I ++ + + R +GF F+ +
Sbjct: 69 PSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETE 128
Query: 242 SLVNLVLQNGPHQ--LDGRTIDPKPCNPRT-LQKPKRGGGYPK 361
+Q G H LDGR I + R+ + + K +PK
Sbjct: 129 EEAMKAIQ-GMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPK 170
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 46.4 bits (105), Expect = 1e-05
Identities = 26/86 (30%), Positives = 44/86 (51%)
Frame = +2
Query: 50 MRMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVT 229
++ +P + + ++V LS S E L + F +G CV+M++ E G+S+GFGFV
Sbjct: 212 LQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVN 270
Query: 230 FADPSLVNLVLQNGPHQLDGRTIDPK 307
F + + L+G+T D K
Sbjct: 271 FENSDDAARAVD----ALNGKTFDDK 292
Score = 44.0 bits (99), Expect = 8e-05
Identities = 24/80 (30%), Positives = 41/80 (51%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
D + L+V L + + L+ +F+ +G + C VM++ SG SRG GFV F+ P
Sbjct: 322 DKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEA 380
Query: 251 NLVLQNGPHQLDGRTIDPKP 310
+ +++G+ I KP
Sbjct: 381 TRAIT----EMNGKMIVTKP 396
Score = 37.1 bits (82), Expect = 0.009
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 59 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
+P + G +F+ L + L FS +G ++ C V + SG+S+G+GFV +
Sbjct: 124 DPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQY 180
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN- 268
L+VG L + L F++ G+V+ V ++ + RS G+G+V +A P + L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 269 GPHQLDGRTI 298
L+GR I
Sbjct: 107 NFMALNGRAI 116
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/77 (32%), Positives = 47/77 (61%)
Frame = +2
Query: 68 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 247
M D+ ++VGGL ++ ++E ++R FS YG V+ V + N S R + +GFVTF++
Sbjct: 1 MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVL-TVKIVNDRSVRGKCYGFVTFSNRRS 59
Query: 248 VNLVLQNGPHQLDGRTI 298
+ +++ +DG++I
Sbjct: 60 ADDAIED----MDGKSI 72
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 46.0 bits (104), Expect = 2e-05
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Frame = +2
Query: 62 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 241
PD + G +FV L + LQ F ++G ++ C V E G+SRG+GFV F
Sbjct: 104 PDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKV-ATLEDGKSRGYGFVQFEQE 162
Query: 242 SLVNLVLQ--NGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRXI 415
+ +Q N D K KP+ Y +++ L ++V+E LR
Sbjct: 163 DAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEE--KYTNLYMKNLDADVSEDLLREK 220
Query: 416 F 418
F
Sbjct: 221 F 221
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/50 (34%), Positives = 33/50 (66%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 241
++V ++ ++E L+++FS+ G + +M + E G+S+GFGFV F+ P
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTP 354
Score = 37.1 bits (82), Expect = 0.009
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 271
L+VG L ++ L F+ + + + K++ SGRS +G+ F NL ++
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 272 PHQ-LDGRTIDPKPCNPRTLQKP-KRGGGYPKVFLGGLPSNVTETDLRXIFR 421
+ L+G+ I +++ P R G VF+ LP +VT L+ +F+
Sbjct: 86 NNSLLNGKMIRVM----WSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFK 133
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD-PSLVNLVLQN 268
LFV G+S+ +++E L + FS+YG+V+ V+ + R +GF +VTF+ +L+
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 269 GPHQLDGRTI 298
+DGR +
Sbjct: 83 NAQLVDGRVV 92
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 45.6 bits (103), Expect = 2e-05
Identities = 23/54 (42%), Positives = 31/54 (57%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
D +FVG LS E + L + FS + D VM + ++GRSRGFGFV+F
Sbjct: 139 DTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSF 192
Score = 33.1 bits (72), Expect = 0.14
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 271
++VG L+ E +Q +L RYF G V++ R +GFGFV + L +Q G
Sbjct: 267 VYVGNLAPEVTQLDLHRYFHALG----AGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMG 322
Query: 272 PHQ--LDGRTI----DPKPCNPRTLQKP 337
Q L R I KP P T P
Sbjct: 323 NTQPYLFNRQIKCSWGNKPTPPGTASNP 350
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 44.8 bits (101), Expect = 4e-05
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 256
+E L++G L + + L FS+ GE++ V++N +G+ G+GF+ F +
Sbjct: 21 EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Query: 257 VLQ--NGPHQLDGR--TIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRXIFRT 424
LQ NG Q+ G T + + QK G + +F+G L +VT+ L+ FR
Sbjct: 81 TLQTYNGT-QMPGTELTFRLNWASFGSGQKVDAGPDH-SIFVGDLAPDVTDYLLQETFRV 138
Query: 425 LWEGHGGGHYV 457
+ G V
Sbjct: 139 HYSSVRGAKVV 149
Score = 37.5 bits (83), Expect = 0.007
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFS-RYGEVIDCVVMKNSESGRSRGFGFVTFADPS 244
+FVG L+ + + LQ F Y V V+ + +GRS+G+GFV FA+ S
Sbjct: 118 IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEES 169
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 44.4 bits (100), Expect = 6e-05
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSR-YGEVIDCVVMKNSESGRSRGFGFVTFADPS--LVNLVL 262
+FVG L+ + + L F Y V V+ + +GRS+G+GFV FAD S + +
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 263 QNGPH-----QLDGRTIDPKP--CNPRTLQKPKRGGG-----YPKVFLGGLPSNVTETDL 406
NG + G + KP P + Q + G +F+G + +VTE DL
Sbjct: 235 MNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDL 294
Query: 407 RXIF 418
+ +F
Sbjct: 295 KSVF 298
Score = 28.3 bits (60), Expect = 4.0
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Frame = +2
Query: 59 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
N D +FVG + ++++L+ F ++GE++ + +G+ GFV +A+
Sbjct: 269 NSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI----PAGKR--CGFVQYAN 322
Query: 239 PSLVNLVLQ--NGPHQLDGRTI----DPKPCNPRTLQKPKR---GGGY 355
+ L NG QL G++I P N +T + GGGY
Sbjct: 323 RACAEQALSVLNGT-QLGGQSIRLSWGRSPSNKQTQPDQAQYGGGGGY 369
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 44.4 bits (100), Expect = 6e-05
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 14/124 (11%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 271
LF LS+ + +++ +F GEV+D N + G RGFG V FA L+
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALEFH 358
Query: 272 PHQLDGRTI-----------DPKPC-NPRT--LQKPKRGGGYPKVFLGGLPSNVTETDLR 409
L GR I +P P++ + GG K+F+ G ++++E D++
Sbjct: 359 GRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSEDDIK 418
Query: 410 XIFR 421
R
Sbjct: 419 NTLR 422
Score = 31.9 bits (69), Expect = 0.33
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQEN----LQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
DEK K+FV G S+++ L+ +FS GE+ + V + ++G S+G ++ F++
Sbjct: 399 DEK-KIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE 455
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 44.4 bits (100), Expect = 6e-05
Identities = 26/80 (32%), Positives = 39/80 (48%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
+ + L++ L E L+ FS YG V VM N + G SRGFGFV +++P
Sbjct: 327 EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEA 385
Query: 251 NLVLQNGPHQLDGRTIDPKP 310
L +++G+ I KP
Sbjct: 386 LRALS----EMNGKMIGRKP 401
Score = 39.1 bits (87), Expect = 0.002
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Frame = +2
Query: 83 KGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF-------ADP 241
KG +F+ L + L FS +G ++ C V + +GRS+G+GFV F A
Sbjct: 135 KGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAI 193
Query: 242 SLVNLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRXIF 418
+N +L N G I + R + + V++ LP + E +LR F
Sbjct: 194 DKLNGMLMNDKQVFVGHFIRRQ---ERARDENTPTPRFTNVYVKNLPKEIGEDELRKTF 249
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
++V L E ++ L++ F ++G + VVM++ +SG SR FGFV F
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNF 276
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 44.4 bits (100), Expect = 6e-05
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 256
DE L++G L + + L F+ GE++ V++N ++G+ G+GF+ FA +
Sbjct: 59 DEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAER 118
Query: 257 VLQ---NGPHQLDGRTIDPKPCNPRTLQKPKRGGGYP--KVFLGGLPSNVTETDLRXIFR 421
VLQ N P + N +L + P +F+G L ++VT+ L FR
Sbjct: 119 VLQTFNNAP--IPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFR 176
Query: 422 TLWEGHGGGHYV 457
+ G V
Sbjct: 177 ASYPSVKGAKVV 188
Score = 35.9 bits (79), Expect = 0.020
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
+D +FVGGL + ++L+ FS+YGE++ + +G+ GFV F++ S
Sbjct: 256 NDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKI----PAGKR--CGFVQFSEKSCA 309
Query: 251 NLVLQ--NGPHQLDGRTI 298
L+ NG QL G T+
Sbjct: 310 EEALRMLNGV-QLGGTTV 326
Score = 35.1 bits (77), Expect = 0.035
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWE-TSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 244
DD +FVG L+ + T L+ + + Y V V+ + +GR++G+GFV F+D S
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 44.4 bits (100), Expect = 6e-05
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 256
DE L++G L + + L F+ GE++ V++N ++G+ G+GF+ FA +
Sbjct: 59 DEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAER 118
Query: 257 VLQ---NGPHQLDGRTIDPKPCNPRTLQKPKRGGGYP--KVFLGGLPSNVTETDLRXIFR 421
VLQ N P + N +L + P +F+G L ++VT+ L FR
Sbjct: 119 VLQTFNNAP--IPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFR 176
Query: 422 TLWEGHGGGHYV 457
+ G V
Sbjct: 177 ASYPSVKGAKVV 188
Score = 35.1 bits (77), Expect = 0.035
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWE-TSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 244
DD +FVG L+ + T L+ + + Y V V+ + +GR++G+GFV F+D S
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESG 202
+D +FVGGL + ++L+ FS+YGE++ + G
Sbjct: 256 NDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 44.0 bits (99), Expect = 8e-05
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Frame = +2
Query: 62 PDMDDD-EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
P+ D + ++ +F + + ++ ++ +FS+ G+V D ++ + S RS+G G++ F D
Sbjct: 159 PEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 218
Query: 239 PSLVNLVLQNGPHQLDGRTIDPKPC----NPRTLQKPKRGGGYP---KVFLGGLPSNVTE 397
V + + G+ + KP N GG P K+++G L N++E
Sbjct: 219 VMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSE 278
Query: 398 TDLRXIF 418
LR IF
Sbjct: 279 LQLRQIF 285
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA--DPSLVNLVL 262
KL+VG L + S+ L++ F +G V + + E+G+ +GFGF+ F + S +
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 263 QNGPHQLDGRTI 298
NG ++ GRTI
Sbjct: 326 LNGKLEIAGRTI 337
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDEXS 518
FF + GKV +V ++ D+ ++S G G++ F D S
Sbjct: 187 FFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMS 221
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 44.0 bits (99), Expect = 8e-05
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Frame = +2
Query: 65 DMDDDEKG-----KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVT 229
D DD E KLF+ GLS+ TS++ L+ F +GE+++ ++ + S RS+G+ F+
Sbjct: 270 DQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLE 329
Query: 230 FADPSLVNLVLQ 265
+ L+
Sbjct: 330 YTTEEAAGTALK 341
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 44.0 bits (99), Expect = 8e-05
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFS-RYGEVIDCVVMKNSESGRSRGFGFVTFADPS-LVNLVLQ 265
+FVG LS + S L FS +Y V V+ ++ +GRS+G+GFV F D + + +
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 266 NGPHQLDGRTIDPKPCNPRTLQKPKRGGGY 355
+ R + P PR ++ GGY
Sbjct: 259 MNGVKCSSRAMRIGPATPRKTNGYQQQGGY 288
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 44.0 bits (99), Expect = 8e-05
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 271
L+V GLS ++ +L+ +F++ G+V D ++ + + SRGFGF++ N +++
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 272 PHQ-LDGRTIDPKPCNPRTLQKPKRG 346
H L GR I + R + P G
Sbjct: 137 DHSVLQGRVITVEKARRRRGRTPTPG 162
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 381 HRTLPKPISGXFFGRYGKVMEVVIMYDQXKKKSXGXGFLSFE 506
HR + + F + GKV +V ++ D ++S G GF+S +
Sbjct: 84 HRVTERDLEDHF-AKEGKVTDVHLVLDPWTRESRGFGFISMK 124
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/107 (25%), Positives = 51/107 (47%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
++++GG+ + ++ +L+ + GEV + +M+ +SG +G+ FVTF L +
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 269 GPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLR 409
L+ K T Q R +FLG +P N E+D++
Sbjct: 153 ----LNNTDFRGKRIKCSTTQAKHR------LFLGNVPRNWMESDIK 189
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/81 (32%), Positives = 43/81 (53%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 271
L+V LS ++ L+ F YG+++ VM + E+GRS+GFGFV F++ +
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCE----ESKQA 360
Query: 272 PHQLDGRTIDPKPCNPRTLQK 334
L+G +D KP R ++
Sbjct: 361 KRYLNGFLVDGKPIVVRVAER 381
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 241
+ + ++V L + + L FS+YG V VVM++ GRSRGFGFV F +P
Sbjct: 198 NQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDG-MGRSRGFGFVNFCNP 252
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Frame = +2
Query: 86 GKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP-SLVNLVL 262
G L+VG LS + ++++L FS V+ + +NS +G+S + ++ F P S N +
Sbjct: 21 GSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMT 80
Query: 263 QNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRXIF 418
+ L G+ + + + G+ +++ L S++T + L +F
Sbjct: 81 RLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMF 132
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
L+V L + L+R F +G ++ C V++ E+G+S+GFGFV F
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVE--ENGQSKGFGFVQF 158
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSF 503
F +YG V VV+M D +S G GF++F
Sbjct: 222 FSQYGTVSSVVVMRD-GMGRSRGFGFVNF 249
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/54 (42%), Positives = 30/54 (55%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
D +FVG LS E + L FS + D VM + ++GRSRGFGFV+F
Sbjct: 143 DTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSF 196
Score = 30.7 bits (66), Expect = 0.75
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 271
++VG LS E +Q +L R F G V++ R +GFGFV + L +Q G
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLG----AGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMG 326
Query: 272 PHQ 280
Q
Sbjct: 327 NAQ 329
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDE 512
F + + +M+DQ +S G GF+SF ++
Sbjct: 168 FSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQ 199
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/54 (44%), Positives = 30/54 (55%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
D +FVG LS E + L FS Y D VM + ++GRSRGFGFV+F
Sbjct: 134 DTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSF 187
Score = 32.7 bits (71), Expect = 0.19
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 271
++VG L+ E SQ +L R+F G V++ R +GFGFV ++ L +Q G
Sbjct: 262 VYVGNLAPEVSQVDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMG 317
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDE 512
F Y + +M+DQ +S G GF+SF ++
Sbjct: 159 FSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQ 190
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 43.2 bits (97), Expect = 1e-04
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
K+ V L + TS++ L+R FS +GE+ + ++K+ RS+G+ F+ F L ++
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 100
Query: 269 GPHQL-DGRT--IDPKPCNPRTLQKPKRGGGYPK 361
++ +GR ID R Q R G P+
Sbjct: 101 MDRRMYNGRMIYIDIAKPGKRDFQGLPRTSGPPE 134
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 235
D K++VG L+ ++E L+ FS G+V+ V + + +S GFGFVTF+
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFS 226
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/91 (26%), Positives = 42/91 (46%)
Frame = +2
Query: 65 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 244
D + ++++G + + E L + +G V VM + SGRSR FGF T
Sbjct: 69 DPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVE 128
Query: 245 LVNLVLQNGPHQLDGRTIDPKPCNPRTLQKP 337
N V++ +L+G T++ + +KP
Sbjct: 129 DANAVVE----KLNGNTVEGREIKVNITEKP 155
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +3
Query: 276 INLMAGPSTLSRAILALFKNRNVAVDT-LRCSLAGCHRTLPKPISGXFFGRYGKVMEVVI 452
+N+ P S + L + VD+ + + +T+ K + F GKV+ +
Sbjct: 149 VNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKV 208
Query: 453 MYDQXKKKSXGXGFLSFEDE 512
KS G GF++F E
Sbjct: 209 SRVPGTSKSTGFGFVTFSSE 228
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/49 (36%), Positives = 32/49 (65%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 235
++FVG L S+E+L++ F GEV + ++KN ++ +S+G F+ FA
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFA 263
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
+F+ GL ++E ++ YG++ + +N S R + FGFVTF
Sbjct: 393 IFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTF 439
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSF 503
FG G+V EV I+ + KKS G FL F
Sbjct: 234 FGHVGEVTEVRILKNPQTKKSKGSAFLRF 262
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 43.2 bits (97), Expect = 1e-04
Identities = 33/78 (42%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +2
Query: 74 DDEKG--KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 247
DD G +L+VG LS T +L+R FSRYG V D V MK R + FV F DP
Sbjct: 5 DDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRD-VDMK-------RDYAFVEFGDPRD 56
Query: 248 VNLVLQNGPHQLDGRTID 301
+ + H LDGR D
Sbjct: 57 AD----DARHYLDGRDFD 70
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 241
++V LS T+ + L+ F +YG + VVM++ + G+SR FGFV F +P
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENP 275
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 271
L+V L + E L+ F+ +G + C VM++ SG S+G GFV F+ S + VL
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVL--- 385
Query: 272 PHQLDGRTIDPKP 310
++++G+ + KP
Sbjct: 386 -NEMNGKMVGGKP 397
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +2
Query: 86 GKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ 265
G LFV L + L FS G ++ C V G+SRG+GFV F +
Sbjct: 134 GNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKV-ATDHMGQSRGYGFVQFDTEDSA----K 188
Query: 266 NGPHQLDGRTIDPK 307
N +L+G+ ++ K
Sbjct: 189 NAIEKLNGKVLNDK 202
Score = 33.9 bits (74), Expect = 0.081
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 271
L+VG L + + L YF+ +V+ V +++ + S G+G+V +++ +Q
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 272 PHQ-LDGRTI 298
+ L+G+ I
Sbjct: 108 NYSYLNGKMI 117
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 417 FGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
FG+YG + V+M D KS GF++FE+
Sbjct: 245 FGQYGSISSAVVMRD-GDGKSRCFGFVNFEN 274
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 42.7 bits (96), Expect = 2e-04
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 256
D+ L+VG L + L FS GEV V++N + +S G+GFV F +
Sbjct: 105 DDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEE 164
Query: 257 VLQNGPHQLDGRTIDPKPCNPRTL----QKPKRGGGYPKVFLGGLPSNVTETDLRXIF 418
VLQN + + P N + ++ G VF+G L +VT+ L F
Sbjct: 165 VLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETF 222
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFS-RYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
+FVG LS + + L FS RY V V+ +S +GRS+G+GFV F D
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGD 253
Score = 34.3 bits (75), Expect = 0.061
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
+FVGG+ + E+L++ FS++GEV+ + +G GFV FAD
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV------GKGCGFVQFAD 365
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 244
L V L + QE+L++ F ++G V D + ++ +G RGFGFV F DP+
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPA 88
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 41.9 bits (94), Expect = 3e-04
Identities = 16/55 (29%), Positives = 33/55 (60%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 256
L++G + + ++ +FS++G V V +N ++G+S+ FGF+ F DP + +
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEI 116
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFED 509
FF ++G V V + ++ KS GF+ FED
Sbjct: 79 FFSQFGTVKRVRVARNKKTGKSKHFGFIQFED 110
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF--ADPSLVNLVLQ 265
++V L + +L+R F +GE+ VVMK+ E G+SR FGFV F A+ ++ +
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 266 NG 271
NG
Sbjct: 180 NG 181
Score = 40.7 bits (91), Expect = 7e-04
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Frame = +2
Query: 83 KGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF-ADPSLVNLV 259
+G +FV L + L FS +G+V+ C V +++ SG S+G+GFV F +D S+
Sbjct: 30 RGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDA-SGVSKGYGFVQFYSDLSVYTAC 88
Query: 260 LQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRXIF 418
+ + + I P R R + V++ L T+ DL+ +F
Sbjct: 89 NFHNGTLIRNQHIHVCPFVSRGQWDKSR--VFTNVYVKNLVETATDADLKRLF 139
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 271
L+V GLS ++ +L+ +F++ G+V D ++ + + SRGFGF++ N +++
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 106
Query: 272 PHQ-LDGRTI 298
H L GR I
Sbjct: 107 DHSVLQGRVI 116
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 381 HRTLPKPISGXFFGRYGKVMEVVIMYDQXKKKSXGXGFLSFE 506
HR + + F + GKV +V ++ D ++S G GF+S +
Sbjct: 54 HRVTERDLEDHF-AKEGKVTDVHLVLDPWTRESRGFGFISMK 94
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +2
Query: 59 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMK-NSESGRSRGFGFVTFA 235
NP + ++GK+FVG L + + +F ++G + + +++K + E ++ GFGF+ +A
Sbjct: 156 NPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYA 215
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 41.5 bits (93), Expect = 4e-04
Identities = 16/54 (29%), Positives = 33/54 (61%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 241
+ G+LFV L + ++E L +FS +G++ + ++ + E+ RSRG ++ + P
Sbjct: 259 DTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIP 312
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ- 265
KLFVG L S+ +Q FS+YG + D +++ ++ S+G F+ + ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQ-TSKGCAFLKYETKEQAVSAMES 165
Query: 266 -NGPHQLDGRTI 298
NG H+++G T+
Sbjct: 166 INGKHKMEGSTV 177
Score = 33.5 bits (73), Expect = 0.11
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
+++E KLFVG + S+ L F + V + ++K+ + SRG F+
Sbjct: 13 EEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEA 72
Query: 251 NLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYP----KVFLGGLPSNVTETDLRXIF 418
+ L N H + +T+ P LQ G K+F+G LP NV+E +++ +F
Sbjct: 73 D-KLVNACH--NKKTL---PGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLF 126
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ- 265
KLFVG L S+ +Q FS+YG + D +++ ++ S+G F+ + ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQ-TSKGCAFLKYETKEQAVSAMES 165
Query: 266 -NGPHQLDGRTI 298
NG H+++G T+
Sbjct: 166 INGKHKMEGSTV 177
Score = 33.5 bits (73), Expect = 0.11
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
+++E KLFVG + S+ L F + V + ++K+ + SRG F+
Sbjct: 13 EEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEA 72
Query: 251 NLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYP----KVFLGGLPSNVTETDLRXIF 418
+ L N H + +T+ P LQ G K+F+G LP NV+E +++ +F
Sbjct: 73 D-KLVNACH--NKKTL---PGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLF 126
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 41.5 bits (93), Expect = 4e-04
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 259
+K L+VGGL+ E ++ L F +G++ D + + + R FGFVTF + +
Sbjct: 11 QKNTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAA 70
Query: 260 LQN-GPHQLDGRTIDPKPCNPRTLQKPKRG 346
+ N +L GR + P ++ ++G
Sbjct: 71 MDNMDGAELYGRVLTVNYALPEKIKGGEQG 100
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 41.1 bits (92), Expect = 5e-04
Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +2
Query: 74 DDEKG--KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 247
DD G +L+VG LS T +L+R FSRYG V D V MK R + FV F+DP
Sbjct: 5 DDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRD-VDMK-------RDYAFVEFSDPRD 56
Query: 248 VNLVLQNGPHQLDGRTID 301
+ + + LDGR D
Sbjct: 57 AD----DARYYLDGRDFD 70
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 40.7 bits (91), Expect = 7e-04
Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ- 265
++FVGGL + ++ ++ +G + ++K+ E+G S+G+ F + D S+ ++
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Query: 266 -NGPHQLDGRTIDPKPCNPRT-LQKPKR 343
NG ++ +T+ + N T LQKP++
Sbjct: 420 LNG-IKMGDKTLTVRRANQGTMLQKPEQ 446
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 40.7 bits (91), Expect = 7e-04
Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ- 265
++FVGGL + ++ ++ +G + ++K+ E+G S+G+ F + D S+ ++
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Query: 266 -NGPHQLDGRTIDPKPCNPRT-LQKPKR 343
NG ++ +T+ + N T LQKP++
Sbjct: 420 LNG-IKMGDKTLTVRRANQGTMLQKPEQ 446
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 40.7 bits (91), Expect = 7e-04
Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ- 265
++FVGGL + ++ ++ +G + ++K+ E+G S+G+ F + D S+ ++
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Query: 266 -NGPHQLDGRTIDPKPCNPRT-LQKPKR 343
NG ++ +T+ + N T LQKP++
Sbjct: 420 LNG-IKMGDKTLTVRRANQGTMLQKPEQ 446
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/78 (25%), Positives = 45/78 (57%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
+LF G L E + + L + F+R+ V+++ +G+++G+GFV+F +P+ + L+
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALK- 196
Query: 269 GPHQLDGRTIDPKPCNPR 322
+++G+ + +P R
Sbjct: 197 ---EMNGKYVGNRPIKLR 211
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 40.7 bits (91), Expect = 7e-04
Identities = 15/56 (26%), Positives = 34/56 (60%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 256
++FVGGL + ++ ++ +G + ++K+ E+G S+G+ F + DPS+ ++
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDI 431
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 271
LFVG L W T+ L+ +YG V + SG+S+G+ V F DP +
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASAC---- 291
Query: 272 PHQLDGRTIDPKPC 313
L+G + +PC
Sbjct: 292 KDALNGYPFNGRPC 305
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Frame = +2
Query: 59 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
+P+ D LFV L++E+S+ ++R F YG + ++ + + + +G+ F+ +
Sbjct: 129 DPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMH 188
Query: 239 PSLVNLVLQNGPHQ-LDGRTIDPKPCNPRTLQ--KPKR-GGGYPKVFLGG 376
+ + Q +DGR + RT+ +P+R GGG +GG
Sbjct: 189 TRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGG 238
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 235
L+V GLS + ++L+ +F++ G+V C ++ + SRGF FVT +
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMS 121
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 235
L+V GLS + ++L+ +F++ G+V C ++ + SRGF FVT +
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMS 120
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 86 GKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
G L V + + E L+ F R+G V D + ++ SG+ RGF FV F D
Sbjct: 47 GSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVD 97
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
LFV LS +T ++ +F+ GEV+ +M N E G+ G+GFV FA L+N
Sbjct: 246 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHE-GKHVGYGFVEFASADETKKALEN 303
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ 265
LFV L +ET N+ +F + GEV+ ++ N + G+ G GFV FA + LQ
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLK-GKLVGCGFVEFASVNEAEEALQ 185
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +2
Query: 83 KGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVL 262
K LFV LS T ++ ++F EV+ ++ N G G GFV FA + L
Sbjct: 488 KKTLFVANLSPRTKISHIIKFFKDVAEVVRVRLIVN-HRGEHVGCGFVEFASVNEAQKAL 546
Query: 263 Q 265
Q
Sbjct: 547 Q 547
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 83 KGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 259
K LFV LS +T ++ +F GEV+ ++ N +G+ G FV F + +V
Sbjct: 358 KKTLFVAHLSRKTEITHIINFFKDVGEVVHVRLILN-HTGKHVGCAFVEFGSANEAKMV 415
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
LFV G S S+ L++ FS +G+V + ++ N + +S G+G+V F
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWF 106
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
LFV G S S+ L++ FS +G+V + ++ N + +S G+G+V F
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWF 125
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +2
Query: 62 PDMDDDE--KGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 235
P++ ++E K +L + W ++ E+++ F +YG VID + M + R+RG F+ A
Sbjct: 84 PEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVID-IEMSMHKKERNRGLVFIEMA 142
Query: 236 DP 241
P
Sbjct: 143 SP 144
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +2
Query: 98 VGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPH 277
V GLS ++++E+L + + +G + V++ SG SRGF F+ F ++ H
Sbjct: 302 VKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEH 361
Query: 278 Q---LDGRTI 298
LDGR +
Sbjct: 362 DGIVLDGRKL 371
Score = 31.5 bits (68), Expect = 0.43
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
L V GL + +E L+ FS++ + D ++++ + SRGF FV F
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHF 506
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN- 268
+FVG + ++ ++E L+ G V+ ++ + E+G+ +G+GF + D +N
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 269 GPHQLDGR--TIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETD 403
++++GR +D + T + + G P GLPS T T+
Sbjct: 71 QSYEINGRQLRVDFAENDKGTDKTRDQSQGGP-----GLPSTTTVTE 112
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 38.3 bits (85), Expect = 0.004
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 271
L++ L + S+E L FS +G+VI V+ K+ G SRGF F+ F + +
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFR-GESRGFAFIEFESADSAGRAMLH- 76
Query: 272 PHQLDGRTIDPK-PCNPRT 325
+DGR I K C RT
Sbjct: 77 ---MDGRLIGQKILCVQRT 92
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF-ADPSLVNL 256
+K KL + L ++ +++ FS G V D + KN E+G +GF FV F N
Sbjct: 329 QKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANA 388
Query: 257 VLQNGPHQLDGRTI 298
+ + H R I
Sbjct: 389 IKKFNGHMFGKRPI 402
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF--ADPS 244
+DD + LF+ L ++ ++E +++ F+ +GEV ++ + + R G FV F AD S
Sbjct: 556 NDDFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADAS 615
Query: 245 L 247
+
Sbjct: 616 V 616
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFS-RYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
+FVG L+ + S L F+ RY V V+ +S +GRS+G+GFV F D
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGD 264
Score = 36.3 bits (80), Expect = 0.015
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +2
Query: 59 NPDMDDDEKGK--LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
N M D E +FVGGL + ++E+L + FS +GEV+ + +G GFV F
Sbjct: 316 NGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV------GKGCGFVQF 369
Query: 233 AD 238
A+
Sbjct: 370 AN 371
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 414 FFGRYGKVMEVVIMYDQXKKKSXGXGFLSFEDE 512
F GRY V ++ D +S G GF+ F DE
Sbjct: 233 FAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDE 265
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
D+ LFVG L W T+ ++ S+YG V + SG+S+G+ V F D
Sbjct: 198 DNGNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYD 252
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQENLQRYFSRYGEVI-DCVVMKNSESGRSRGFGFVTF 232
D LF+G L + ++ L FS +G + + +M++ ++G SRGFGF+++
Sbjct: 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISY 161
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 37.9 bits (84), Expect = 0.005
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Frame = +2
Query: 68 MDDDEKG-KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 244
+D +G +FV L + + E L F +G + + S + FGFVTFA
Sbjct: 270 IDQQAEGYTIFVANLLMDATPEQLNETFKGFGAITKDGIQVRSYRLKGNCFGFVTFASAE 329
Query: 245 LVNLVLQ---NGPHQLDGR--TIDPKPCNPRTLQKPKRGGGY 355
V LVLQ ++ R +I+ K N + R GGY
Sbjct: 330 AVKLVLQAHKESAIRIGNRRVSIEEKRGNNDNGRPAMRNGGY 371
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 37.1 bits (82), Expect = 0.009
Identities = 17/80 (21%), Positives = 37/80 (46%)
Frame = +2
Query: 95 FVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGP 274
F+ LS + +E+++++F G V ++ + ++G+ RG + F D + +
Sbjct: 654 FISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNR 713
Query: 275 HQLDGRTIDPKPCNPRTLQK 334
G+ I NP+ +K
Sbjct: 714 KMFFGKKISIARSNPKKGKK 733
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 37.1 bits (82), Expect = 0.009
Identities = 17/80 (21%), Positives = 37/80 (46%)
Frame = +2
Query: 95 FVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGP 274
F+ LS + +E+++++F G V ++ + ++G+ RG + F D + +
Sbjct: 654 FISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNR 713
Query: 275 HQLDGRTIDPKPCNPRTLQK 334
G+ I NP+ +K
Sbjct: 714 KMFFGKKISIARSNPKKGKK 733
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 37.1 bits (82), Expect = 0.009
Identities = 12/55 (21%), Positives = 33/55 (60%)
Frame = +2
Query: 68 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
++D +FV + + ++++L R+F+++GEV+ ++ + +G+ G ++ F
Sbjct: 510 LEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEF 564
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 37.1 bits (82), Expect = 0.009
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Frame = +2
Query: 68 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 247
M+++E+ KLFVG + ++ L F + V + ++K + RG F+T
Sbjct: 6 MENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTRED 65
Query: 248 VNLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYP----KVFLGGLPSNVTETDLRXI 415
+ V+ N H + +T+ P +P LQ G K+F+G LP NV+ET+++ +
Sbjct: 66 ADKVI-NSFH--NKKTL-PGASSP--LQVKYADGELERLEHKLFVGMLPKNVSETEVQSL 119
Query: 416 F 418
F
Sbjct: 120 F 120
Score = 35.5 bits (78), Expect = 0.026
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF--ADPSLVNLVL 262
KLFVG L S+ +Q FS YG + D +++ S S+G F+ + + ++ +
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQ-TSKGCLFLKYESKEQAVAAMEA 159
Query: 263 QNGPHQLDGRTI 298
NG H ++G +
Sbjct: 160 LNGRHIMEGANV 171
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 36.7 bits (81), Expect = 0.011
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVI----DCVVMKNSESGRSRGFGFVTF 232
D +FVG LS E + L FS + D VM + ++GRSRGFGFV+F
Sbjct: 143 DTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSF 200
Score = 30.7 bits (66), Expect = 0.75
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 271
++VG LS E +Q +L R F G V++ R +GFGFV + L +Q G
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLG----AGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMG 330
Query: 272 PHQ 280
Q
Sbjct: 331 NAQ 333
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 80 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
++ + V LS +T +L F +G V C V + ++ SRGFGFV+F
Sbjct: 172 DENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSF 222
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +2
Query: 77 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
+++ + V LS +T + +L F +G V V + ++G SRGFGFV F
Sbjct: 210 NDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNF 261
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 35.9 bits (79), Expect = 0.020
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +2
Query: 65 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF--AD 238
D + + KLFVG L S+ +Q FS YG + D +++ S S+G F+ + +
Sbjct: 102 DCSCNPEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQ-TSKGCLFLKYESKE 160
Query: 239 PSLVNLVLQNGPHQLDGRTI 298
++ + NG H ++G +
Sbjct: 161 QAVAAMEALNGRHIMEGANV 180
Score = 29.9 bits (64), Expect = 1.3
Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Frame = +2
Query: 68 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 247
M+++E+ KLFVG + ++ L F + V + ++K + RG F+T
Sbjct: 6 MENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTRED 65
Query: 248 VNLVLQNGPHQ--LDGRT--IDPKPCNPRTLQKPKRG---GGYPKVFLGGLPSNVTETDL 406
+ V+ + ++ L G + + K + + K+F+G LP NV+ET++
Sbjct: 66 ADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEV 125
Query: 407 RXIF 418
+ +F
Sbjct: 126 QSLF 129
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 35.5 bits (78), Expect = 0.026
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
+FVG +ET Q +L+R F +YG V D V MK+ G+ FV F D
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRV-DRVDMKS-------GYAFVYFED 44
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 35.1 bits (77), Expect = 0.035
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 65 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVM---KNSESGRSRGFGFVTF 232
D D + L+VG LS + + L R F R+G + +M + E R R GFV+F
Sbjct: 172 DDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSF 230
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 34.7 bits (76), Expect = 0.046
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 125 QENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG-PHQLDGRTID 301
+E++ YFS +G V D + + R FGFVTF P V +L G PH + +
Sbjct: 272 EEDVSNYFSTFGPVQDVRIPYQQK----RMFGFVTFVYPETVKSILAKGNPHFVCDSRVL 327
Query: 302 PKP 310
KP
Sbjct: 328 VKP 330
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 34.7 bits (76), Expect = 0.046
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
LFV L+ T E+L FSR+G V+ V+++ ++G S + F+ F
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEF 291
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 34.3 bits (75), Expect = 0.061
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +2
Query: 50 MRMNPDMDDDEKGK---LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFG 220
+R P D E L + L + +L+ F R+G + D + +N +G RGFG
Sbjct: 32 LRERPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFG 91
Query: 221 FVTF 232
FV +
Sbjct: 92 FVKY 95
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 33.9 bits (74), Expect = 0.081
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Frame = +2
Query: 125 QENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG-PHQLDGRTID 301
+E++ YFS +G V D + + R FGFVTF P V +L G PH +
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQQK----RMFGFVTFMYPETVKSILAKGNPHFV------ 218
Query: 302 PKPCNPRTLQKP-KRGGGYPKVFLGGLPSNVTETDLRXIFRTLWE 433
C+ R L KP K G P + ++ + L +++ +E
Sbjct: 219 ---CHSRVLVKPYKEKGKVPDKYRTKPSRDIMDFQLDLLWKRRFE 260
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 33.9 bits (74), Expect = 0.081
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF---ADPSLVNLVL 262
L V LS ++ +L+ F +GEVI + + RG G+V F AD L +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 263 QNGPHQLDGRTIDPK---PCNPRTLQKPKRGGGYPK 361
Q+DG+ + P + PK PK
Sbjct: 160 DGA--QIDGKVVKATFTLPPRQKVSSPPKPVSAAPK 193
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 33.9 bits (74), Expect = 0.081
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF---ADPSLVNLVL 262
L V LS ++ +L+ F +GEVI + + RG G+V F AD L +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 263 QNGPHQLDGRTIDPK---PCNPRTLQKPKRGGGYPK 361
Q+DG+ + P + PK PK
Sbjct: 160 DGA--QIDGKVVKATFTLPPRQKVSSPPKPVSAAPK 193
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 33.5 bits (73), Expect = 0.11
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 9/127 (7%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
+D + ++V + ++E L FS G+V+DC + + S F FV FAD
Sbjct: 136 EDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHS--VLRFAFVEFADDQGA 193
Query: 251 NLVLQNGPHQL---DGRTIDPK----PCNPRTL--QKPKRGGGYPKVFLGGLPSNVTETD 403
+ L G L R + K P NP L + +R ++ + V++ D
Sbjct: 194 HEALSLGGTMLGFYPVRVLPSKTAILPVNPTFLPRSEDEREMCTRTIYCTNIDKKVSQAD 253
Query: 404 LRXIFRT 424
+R F +
Sbjct: 254 VRNFFES 260
>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 536
Score = 33.5 bits (73), Expect = 0.11
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 122 SQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG-PHQLDGRTI 298
++ ++ YF+ YG V D + + R +GFVTFA V +L G PH +
Sbjct: 330 TEHDVSIYFTSYGHVEDVRI----PCQQKRMYGFVTFASSETVKHILAKGNPHFI----- 380
Query: 299 DPKPCNPRTLQKPKR 343
CN R L KP R
Sbjct: 381 ----CNARVLVKPYR 391
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
+++G +S+ T++E L FSR GE+ ++ + + GF FV F
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLF 82
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 110 SWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
S ++E L+ FSR GE+ D V +K G+SR F ++ F
Sbjct: 11 SKHVTEERLRDVFSRKGEIAD-VKLKRKSDGKSRQFAYIGF 50
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/56 (23%), Positives = 30/56 (53%)
Frame = +2
Query: 65 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
D D KL+V +S ++ ++++ F +YG V + ++ K+ +G + F+ +
Sbjct: 103 DNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKY 158
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 235
KL+V L+ +T++ + FSRYG +I+ + M + RG+ FV F+
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYG-IIEDIYMALDDMKICRGYAFVQFS 255
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 32.7 bits (71), Expect = 0.19
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +2
Query: 122 SQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG-PHQL-DGRT 295
+ E++ YF +G V D + + R FGFVTF V ++L G PH + D R
Sbjct: 331 TDEDVSNYFGNFGPVQDVRIPYQQK----RMFGFVTFLHSETVRIILARGNPHFICDSRV 386
Query: 296 -IDPKPCNPRTLQK 334
+ P R L+K
Sbjct: 387 LVKPYKEKGRILEK 400
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 32.7 bits (71), Expect = 0.19
Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 9/135 (6%)
Frame = +2
Query: 47 GMRMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFV 226
G +D + ++V + ++E L FS G+V+DC + + S F FV
Sbjct: 115 GRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNS--VLRFAFV 172
Query: 227 TFADPSLVNLVLQNGPHQL---DGRTIDPK----PCNPRTL--QKPKRGGGYPKVFLGGL 379
F+D L G + R + K P NP L + +R ++ +
Sbjct: 173 EFSDDQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTIYCTNV 232
Query: 380 PSNVTETDLRXIFRT 424
N TE D+ F++
Sbjct: 233 DKNATEDDVNTFFQS 247
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 31.9 bits (69), Expect = 0.33
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +2
Query: 59 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEV 166
NP D KG L V L S + L R YGEV
Sbjct: 293 NPSQKDTSKGALLVNNLDSSISNQELNRLVKSYGEV 328
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 31.9 bits (69), Expect = 0.33
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 9/128 (7%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP--- 241
DD + ++V + + ++ENL F G+V+DC V + S F F+ F +
Sbjct: 164 DDVIRRTVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNS--VLRFAFIEFTNEEGA 221
Query: 242 ----SLVNLVLQNGPHQLDGRTIDPKPCNPRTL--QKPKRGGGYPKVFLGGLPSNVTETD 403
S+ VL P ++ P NP L + +R V+ + +T+ D
Sbjct: 222 RAALSMSGTVLGFYPLKVLPSKTAIAPVNPTFLPRSEDEREMCVRTVYCTNIDKRITQID 281
Query: 404 LRXIFRTL 427
L+ F L
Sbjct: 282 LKGFFEML 289
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 31.5 bits (68), Expect = 0.43
Identities = 15/43 (34%), Positives = 28/43 (65%)
Frame = +2
Query: 104 GLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
GLS T+ ++L++ F+ + +I K+ ++ R +GFGF+TF
Sbjct: 77 GLSAYTTDQSLRQLFAPFARLI-----KDQQTQRPKGFGFITF 114
>At3g01150.1 68416.m00019 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Sus scrofa} SP|Q29099, {Mus musculus}
SP|P17225; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 31.5 bits (68), Expect = 0.43
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 9/140 (6%)
Frame = +2
Query: 107 LSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD----PSLVNLVLQNG- 271
L WE +E L R+G++++ S G +R FV FAD S+V+ +
Sbjct: 24 LPWECVEEELIDLCKRFGKIVN----TKSNVGANRNQAFVEFADLNQAISMVSYYASSSE 79
Query: 272 PHQLDGRTIDPKPCNPRTLQKPKRGGGYP----KVFLGGLPSNVTETDLRXIFRTLWEGH 439
P Q+ G+T+ + N + + G P V G+ S+ D + ++
Sbjct: 80 PAQIRGKTVYIQYSNRHEIVNNQSPGDVPGNVLLVTFEGVESHEVSID---VIHLVFSAF 136
Query: 440 GGGHYV*SXEEKVXGFXILV 499
G H + + EK GF LV
Sbjct: 137 GFVHKI-ATFEKAAGFQALV 155
>At1g51520.2 68414.m05799 expressed protein contains a weak hit to
PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 513
Score = 30.3 bits (65), Expect = 1.00
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +2
Query: 122 SQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG-PHQL-DGRT 295
+ E++ YF +G V D + + R +GFVTFA V +L G PH + D R
Sbjct: 279 TDEDVSTYFRDFGLVDDVRIPYQQQ----RMYGFVTFAKAETVRTILARGNPHFICDSRV 334
Query: 296 -IDPKPCNPRTLQK 334
+ P + LQK
Sbjct: 335 LVKPYKEKGKILQK 348
>At1g51520.1 68414.m05798 expressed protein contains a weak hit to
PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 414
Score = 30.3 bits (65), Expect = 1.00
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +2
Query: 122 SQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG-PHQL-DGRT 295
+ E++ YF +G V D + + R +GFVTFA V +L G PH + D R
Sbjct: 279 TDEDVSTYFRDFGLVDDVRIPYQQQ----RMYGFVTFAKAETVRTILARGNPHFICDSRV 334
Query: 296 -IDPKPCNPRTLQK 334
+ P + LQK
Sbjct: 335 LVKPYKEKGKILQK 348
>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 204
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 59 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSR 211
+P+ D LFV L++E+S+ ++R F YG + ++S +G R
Sbjct: 129 DPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVGYSEHSLAGSVR 179
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +2
Query: 59 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
NP D +G L V L+ S +L+ F YGE+ + N + F V AD
Sbjct: 213 NPSEKDVNQGTLVVFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSAD 272
Query: 239 PSL 247
+L
Sbjct: 273 AAL 275
>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 130
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVT 229
LFV G S S+ L++ FS +G+V + S++ R R VT
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNEHYFSGSKNHRKRKDSAVT 105
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 28.7 bits (61), Expect = 3.0
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP-------SLV 250
++V + + ++E L F +G+V+DC + + S F F+ F D +L
Sbjct: 152 VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNS--VLRFAFIEFTDEVGARTALNLS 209
Query: 251 NLVLQNGPHQLDGRTIDPKPCNPRTLQK--PKRGGGYPKVFLGGLPSNVTETDLRXIFRT 424
+L P ++ P NP L + +R ++ + +T+TD++ F +
Sbjct: 210 GTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKLTQTDIKLFFES 269
Query: 425 L 427
+
Sbjct: 270 V 270
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +2
Query: 95 FVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGP 274
F L + + L +YFS +GE+ V + +G S G+ ++ + + L+ G
Sbjct: 241 FDASLPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLKEGA--EKALELGR 298
Query: 275 HQLDG 289
H + G
Sbjct: 299 HDVGG 303
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 28.3 bits (60), Expect = 4.0
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = -3
Query: 402 SVSVTFDGSPP-RNTLGYPPPRFGF*RVRGLHGLGSMVLPSS**GPFCSTRLTSEGSANV 226
S+S+ SP N G P PRFG G G V S+ F STR T S
Sbjct: 224 SLSMPSQNSPNVNNQSGLPEPRFGL-------GGGRAVTASA----FPSTRSTETISRPG 272
Query: 225 TKPKPLERPDSLFFMTTQSITS 160
+ P + P+S+ F TQS +S
Sbjct: 273 RRLNPGQPPESVAFSFTQSGSS 294
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
++VG ++T +L+R FS++G V V MK+ G+ FV F D
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRV-KRVDMKS-------GYAFVYFED 44
>At1g05890.1 68414.m00617 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 552
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = +2
Query: 116 ETSQENLQRYFSRYGEVIDCVVMKNSESG--RSRGFGFVTFADPSLVNLV--LQNGPHQL 283
E+ E L + + EV + + E R++ G + NLV L+NG +
Sbjct: 453 ESGLERLHKCVEKDIEVFELAEGPSEEFNHFRTKLTGLTSITKTFFENLVKALENGLADV 512
Query: 284 DGRTIDPKPCNPRTLQKPKRGG 349
D + KP N + K K GG
Sbjct: 513 DSQAASSKPANSKPSSKTKGGG 534
>At5g20870.1 68418.m02478 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 [Nicotiana tabacum]
Length = 501
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 125 QENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNL 256
Q+N+ +Y SRYG I V + N ++ FV P+L N+
Sbjct: 103 QQNVSQYISRYGTDIRYVAVGNEPFLKTYNNRFVRSTYPALQNV 146
>At5g13620.1 68418.m01578 expressed protein ; expression supported
by MPSS
Length = 301
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/67 (16%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSR-YGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 250
+D++ + S+ + YF+R +GE+I+ ++M E + + +++
Sbjct: 199 EDDRTVFLTFSRGYPLSEAEVHAYFTRRFGEIIEAIIMPGGEGNEQALYAKMVLHSAAMI 258
Query: 251 NLVLQNG 271
++ +G
Sbjct: 259 PEIVSDG 265
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ-- 265
+++G + S L + G VID + ++ E+ + +GF F + + + ++
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVKLF 68
Query: 266 NGPHQLDGRTI 298
+G L RT+
Sbjct: 69 SGLVSLYNRTL 79
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVID 172
L+VGG+ S+++L+ FS++G++ D
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIED 278
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
+D + ++V L + ++E L F G+V+DC + + S F F+ F D
Sbjct: 168 EDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNS--VLRFAFIEFTD 221
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 241
++VG L + + ++ F +YG ++D + +K R G+ FV F DP
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVD-IDLKIPP--RPPGYAFVEFEDP 55
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA-DPSLVNLVLQ 265
KL++ L + E+++ F+ GE + + SGRS+G V ++ + V +
Sbjct: 87 KLYISNLDYGVMNEDIKELFAEVGE-LKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKK 145
Query: 266 NGPHQLDGR 292
QLDG+
Sbjct: 146 YNDVQLDGK 154
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA-DPSLVNLVLQ 265
KL++ L + E+++ F+ GE + + SGRS+G V ++ + V +
Sbjct: 23 KLYISNLDYGVMNEDIKELFAEVGE-LKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKK 81
Query: 266 NGPHQLDGR 292
QLDG+
Sbjct: 82 YNDVQLDGK 90
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 89 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA-DPSLVNLVLQ 265
KL++ L + E+++ F+ GE + + SGRS+G V ++ + V +
Sbjct: 89 KLYISNLDYGVMNEDIKELFAEVGE-LKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKK 147
Query: 266 NGPHQLDGR 292
QLDG+
Sbjct: 148 YNDVQLDGK 156
>At5g54210.1 68418.m06753 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 306
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +2
Query: 50 MRMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFV 226
M+ N ++ K + ++ +S N +F RYG I C N E R R F ++
Sbjct: 4 MQQNLSVEPKSKKRKIDSEINNSSSSTNCDHFFVRYG--ICCNCRSNVERHRGRSFDYL 60
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGR 205
+D+ L+VGGL+ ++++ +F YGE+ VM +E G+
Sbjct: 220 EDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRVM--AEDGK 262
>At4g35030.1 68417.m04969 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 321
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 228 HLLILHWSTSCYRMDLINLMAGP 296
HL ILH STSC +I LM P
Sbjct: 273 HLDILHRSTSCMEKSVIKLMFTP 295
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
++VG L + + ++ FS+YG V+ + +K R G+ FV F D
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQ-IDLKIPP--RPPGYAFVEFED 54
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 92 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
++VG L + + ++ FS+YG V+ + +K R G+ FV F D
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQ-IDLKIPP--RPPGYAFVEFED 54
>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
protein ESTs gb|F20110 and gb|F20109 come from this
gene; contains Pfam profile PF00515: TPR Domain
Length = 1558
Score = 27.5 bits (58), Expect = 7.0
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Frame = +2
Query: 53 RMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 232
R++ ++D+ G+ + GL E + + FSR E + +K+ E + +G+ +
Sbjct: 616 RLHELNEEDDLGQKSIDGLFTELKELLSEEAFSRLKETGTGLHLKSKEELTNMAYGY--Y 673
Query: 233 ADPSLVNLVLQNGPHQL---DGRTI 298
+ +L LV G +L DGRT+
Sbjct: 674 DEIALPRLVADFGSLELSPVDGRTL 698
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 71 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 238
+D K ++V + + ++E L F G+V+DC + + +S F F+ F D
Sbjct: 132 EDMIKRTVYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKS--ILRFAFIEFTD 185
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 95 FVGGLSWETSQENLQRYFSRYGEVI 169
+VG L +T + +L+ FS++G+VI
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVI 35
>At1g19600.1 68414.m02441 pfkB-type carbohydrate kinase family
protein contains Pfam profile: PF00294 pfkB family
carbohydrate kinase
Length = 355
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 74 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRS 208
DDE+G+LFV + + S ++ R + G CV + + R+
Sbjct: 100 DDEQGQLFVSNMGF--SGVSISRLRKKKGSTAQCVCLVDDSGNRT 142
>At1g04130.1 68414.m00402 tetratricopeptide repeat (TPR)-containing
protein contains non-consensus donor splice site AT at
exon 4 and acceptor splice site at exon5; Contains
similarity to serine/threonine protein phosphatase
gb|X83099 from S. cerevisiae, SP|O95801
Tetratricopeptide repeat protein 4 Homo sapiens;
contains Pfam profile PF00515: TPR Domain
Length = 360
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 116 ETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN 268
E E +++ Y E IDC S+ S + F++ S VNL+L N
Sbjct: 36 EEGNECVRKGKKHYSEAIDCYTKAISQGVLSDSETSILFSNRSHVNLLLGN 86
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,523,595
Number of Sequences: 28952
Number of extensions: 273766
Number of successful extensions: 1200
Number of sequences better than 10.0: 209
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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