Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13k20f
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0051 - 25190803-25191216,25191301-25191891,25193248-251933...    31   0.63 
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817           29   2.6  
11_06_0431 - 23424969-23426081                                         29   3.4  
03_06_0449 - 34013973-34014056,34014595-34014630,34014729-340148...    29   3.4  
01_01_0433 + 3282195-3285185                                           29   3.4  
05_04_0206 + 19034259-19035462,19036870-19037045,19037752-190379...    27   7.8  
02_02_0615 - 12152941-12153726                                         27   7.8  
01_01_0430 + 3258438-3259200,3259929-3261454                           27   7.8  

>05_06_0051 -
           25190803-25191216,25191301-25191891,25193248-25193317,
           25193392-25193443,25195368-25195440,25195557-25195646
          Length = 429

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = -2

Query: 287 SMNEVPRRHRASPGPLPDRSATLHTLHSDDTRTTSMRVRSDRTLRDHCINRERRAHPQPS 108
           S+   PRR RA P P  +R+A   T+ +   R  + R R+ R L++  + R + A  + S
Sbjct: 207 SLPPPPRRARAPPSPARERAA--RTIQAHFRRFLARRSRTLRHLKELAVLRSKAAALRGS 264

Query: 107 IS*R 96
           +S R
Sbjct: 265 LSGR 268


>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
          Length = 883

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 261 PSLARTPPG-PIGNASHLTLGRHAHDINARSIGSDTPRSLHQSGAASASPAEHL 103
           PS+A  PP  P G     T GR++      S+   TPR    +  +  SPA HL
Sbjct: 680 PSMAAPPPAAPRGRTMPPTTGRYSFSYGGLSLSYTTPRG-PIAPLSLRSPAPHL 732


>11_06_0431 - 23424969-23426081
          Length = 370

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -1

Query: 273 AAPTPSLARTPPGPIGNASHLTLGRHAHDINARSIGSDTPRSLHQSGAASASP 115
           AAPTP +A  PP    +   L  G H  D+  + +G +T  + H+   A+ SP
Sbjct: 179 AAPTPLVAVPPPDMHRHLGSLLSGGHGADVTLQ-VGDET-FAAHRCVLAARSP 229


>03_06_0449 -
           34013973-34014056,34014595-34014630,34014729-34014816,
           34015034-34015143,34015611-34015715,34015812-34015903,
           34016145-34016232,34016407-34016526,34016603-34016721,
           34017253-34018126
          Length = 571

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = -3

Query: 268 ADTEPRPDPSRTDRQRFTPYTRTTRARHQCAFDRIGHSEITASIGSGERIPSRASPEDQE 89
           +D E    P +  R +  PY  + +        R+  S     + S E+IP ++ PE+ E
Sbjct: 257 SDIEETLPPKKRKRMKLDPYDTSNK--------RLEDSTAKQDVCSPEKIPEKSPPEETE 308

Query: 88  TTLD 77
           T+++
Sbjct: 309 TSIN 312


>01_01_0433 + 3282195-3285185
          Length = 996

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 284 MNEVPRRHRASPGPLPDRSATLHTLHSDDTRTTSM 180
           +N +   H A  GP+P++ A+LH L S D  +  +
Sbjct: 858 LNGLNMSHNALTGPIPNQLASLHQLESLDLSSNKL 892


>05_04_0206 +
           19034259-19035462,19036870-19037045,19037752-19037975,
           19038133-19038914,19039337-19039494
          Length = 847

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = -2

Query: 263 HRASPGPLPDRSATLHTLHSDDTR---TTSMRVRSDRTLRDHCINRERRAHPQPSI 105
           HR+   PLP ++     LHSD  R        +  +    +H  +R RR   +P +
Sbjct: 146 HRSKSMPLPPQTKGPAVLHSDSIREDDEEEAEIEEEEDEDEHLDDRRRRLRHRPQV 201


>02_02_0615 - 12152941-12153726
          Length = 261

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 206 SDDTRTTSMRVRSDRTLRDHCINRERRAHPQPSIS*RPGN 87
           S+  R  S  +R D T+     ++E  A P+PS+   PG+
Sbjct: 132 SESLRDDSFSIRCDVTVMKPICSKETPAMPKPSVEVPPGD 171


>01_01_0430 + 3258438-3259200,3259929-3261454
          Length = 762

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 263 HRASPGPLPDRSATLHTLHSDDTRTTSM 180
           H A  GP+P++ A+LH L S D  +  +
Sbjct: 636 HNALTGPIPNQLASLHQLESLDLSSNKL 663


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,888,837
Number of Sequences: 37544
Number of extensions: 201137
Number of successful extensions: 874
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)