Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13k16f
         (675 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK001267-1|BAA91590.1|  639|Homo sapiens protein ( Homo sapiens ...    31   3.7  
AC093727-1|AAX81992.1|  639|Homo sapiens unknown protein.              31   3.7  
AF499232-1|AAP29638.1|  523|Homo sapiens gag protein protein.          30   8.6  

>AK001267-1|BAA91590.1|  639|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10405 fis, clone NT2RM4000496, weakly similar to
           SAP1 PROTEIN. ).
          Length = 639

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +2

Query: 362 YAPGCK--WLNCQQSSQSQPHLPAVHPAD-QRTRLWQPSPSP 478
           YAPG    +L+   SSQ  P LP+ HP+    + L QP P P
Sbjct: 65  YAPGYNGSYLHSTYSSQPAPALPSPHPSPLHSSGLLQPPPPP 106


>AC093727-1|AAX81992.1|  639|Homo sapiens unknown protein.
          Length = 639

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +2

Query: 362 YAPGCK--WLNCQQSSQSQPHLPAVHPAD-QRTRLWQPSPSP 478
           YAPG    +L+   SSQ  P LP+ HP+    + L QP P P
Sbjct: 65  YAPGYNGSYLHSTYSSQPAPALPSPHPSPLHSSGLLQPPPPP 106


>AF499232-1|AAP29638.1|  523|Homo sapiens gag protein protein.
          Length = 523

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 431 HPADQRTRLWQPSPSPSVLSYPNSTISYT 517
           H  ++R  ++QP  S ++L++ N+T+SYT
Sbjct: 206 HMVEKRVFVYQPFTSANLLNWKNNTLSYT 234


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,440,140
Number of Sequences: 237096
Number of extensions: 1476016
Number of successful extensions: 4100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4099
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)