Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13k16f
(675 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 26 0.29
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 26 0.38
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 26 0.38
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 25 0.50
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 24 1.2
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 24 1.2
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 24 1.5
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 24 1.5
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 2.0
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 23 2.0
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 23 2.7
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 23 3.5
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 23 3.5
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 23 3.5
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 23 3.5
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 23 3.5
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 22 4.7
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 22 4.7
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 22 4.7
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 22 4.7
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 22 6.1
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 21 8.1
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 21 8.1
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 21 8.1
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 26.2 bits (55), Expect = 0.29
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 146 NKNYFNTNNYSIKYFMNCR 90
N N +N NNY+ Y NC+
Sbjct: 334 NNNNYNNNNYNNNYNNNCK 352
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = -2
Query: 161 LRKVRNKNYFNTNNYSIKYFMNCRN 87
+ + NK N NNY Y N N
Sbjct: 315 ISSLSNKTIHNNNNYKYNYNNNNYN 339
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 25.8 bits (54), Expect = 0.38
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 146 NKNYFNTNNYSIKYFMNCRNC*SKIEVVMYCSFDCREYAPK 24
N N +N NNY+ K + N N +I V + C + P+
Sbjct: 99 NNNNYNNNNYNKKLYYNIINI-EQIPVPVPVPVYCGNFPPR 138
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 25.8 bits (54), Expect = 0.38
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 146 NKNYFNTNNYSIKYFMNCRNC*SKIEVVMYCSFDCREYAPK 24
N N +N NNY+ K + N N +I V + C + P+
Sbjct: 99 NNNNYNNNNYNKKLYYNIINI-EQIPVPVPVPVYCGNFPPR 138
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 25.4 bits (53), Expect = 0.50
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -2
Query: 161 LRKVRNKNYFNTNNYSIKYFMNCR 90
+ + NK N NNY Y NC+
Sbjct: 82 ISSLSNKTIHNNNNYKYNYNNNCK 105
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 24.2 bits (50), Expect = 1.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 140 NYFNTNNYSIKYFMNCRNC*SKIEVVMYCSFDCREYAPK 24
NY N NNY+ K + N N +I V + C + P+
Sbjct: 95 NYNNNNNYNKKLYYNI-NYIEQIPVPVPVPIYCGNFPPR 132
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 24.2 bits (50), Expect = 1.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 140 NYFNTNNYSIKYFMNCRNC*SKIEVVMYCSFDCREYAPK 24
NY N NNY+ K + N N +I V + C + P+
Sbjct: 333 NYNNNNNYNKKLYYNI-NYIEQIPVPVPVPIYCGNFPPR 370
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 23.8 bits (49), Expect = 1.5
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 576 IVVSGPSYIAATYG 617
I VSGPSY A +YG
Sbjct: 2 IAVSGPSYEAFSYG 15
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 23.8 bits (49), Expect = 1.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 140 NYFNTNNYSIKYFMNCRNC*SKIEVVMYCSFDCREYAPK 24
NY N NNY+ K + N N +I V + C + P+
Sbjct: 95 NYNNDNNYNKKLYYNI-NYIEQIPVPVPVPIYCGNFPPR 132
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 23.4 bits (48), Expect = 2.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 69 FNFRLAVSTIHKIFNRIIVCVKIIFIS 149
FN L T+ N II CV I F+S
Sbjct: 228 FNITLRRKTLFYTVNLIIPCVGISFLS 254
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 23.4 bits (48), Expect = 2.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2
Query: 164 SLRKVRNKNYFNTNNYSIKY 105
S + + N N +N NNY+ Y
Sbjct: 319 SNKTIHNNNNYNNNNYNNNY 338
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 23.0 bits (47), Expect = 2.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 146 NKNYFNTNNYSIKYF 102
+ NY+N NNY Y+
Sbjct: 314 SNNYYNNNNYKKLYY 328
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 3.5
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = -2
Query: 173 KFESLRKVRNKNYFNTNNYSIKYFMNCRNC*SKIEVVMYCSFDCREYAPK 24
K+ + N NY N NNY + N N +I + + C + P+
Sbjct: 90 KYSNYNNYNNNNY-NNNNYKKLQYYNI-NYIEQIPIPVPVPIYCGNFPPR 137
Score = 21.4 bits (43), Expect = 8.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -2
Query: 179 VSKFESLRKVRNKNYFNTNNYS 114
+S + K N N +N NNY+
Sbjct: 82 ISSLSNNYKYSNYNNYNNNNYN 103
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 3.5
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = -2
Query: 173 KFESLRKVRNKNYFNTNNYSIKYFMNCRNC*SKIEVVMYCSFDCREYAPK 24
K+ + N NY N NNY + N N +I + + C + P+
Sbjct: 90 KYSNYNNYNNNNY-NNNNYKKLQYYNI-NYIEQIPIPVPVPIYCGNFPPR 137
Score = 21.4 bits (43), Expect = 8.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -2
Query: 179 VSKFESLRKVRNKNYFNTNNYS 114
+S + K N N +N NNY+
Sbjct: 82 ISSLSNNYKYSNYNNYNNNNYN 103
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 3.5
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = -2
Query: 173 KFESLRKVRNKNYFNTNNYSIKYFMNCRNC*SKIEVVMYCSFDCREYAPK 24
K+ + N NY N NNY + N N +I + + C + P+
Sbjct: 90 KYSNYNNYNNNNY-NNNNYKKLQYYNI-NYIEQIPIPVPVPIYCGNFPPR 137
Score = 21.4 bits (43), Expect = 8.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -2
Query: 179 VSKFESLRKVRNKNYFNTNNYS 114
+S + K N N +N NNY+
Sbjct: 82 ISSLSNNYKYSNYNNYNNNNYN 103
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 3.5
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = -2
Query: 173 KFESLRKVRNKNYFNTNNYSIKYFMNCRNC*SKIEVVMYCSFDCREYAPK 24
K+ + N NY N NNY + N N +I + + C + P+
Sbjct: 90 KYSNYNNYNNNNY-NNNNYKKLQYYNI-NYIEQIPIPVPVPIYCGNFPPR 137
Score = 21.4 bits (43), Expect = 8.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -2
Query: 179 VSKFESLRKVRNKNYFNTNNYS 114
+S + K N N +N NNY+
Sbjct: 82 ISSLSNNYKYSNYNNYNNNNYN 103
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 22.6 bits (46), Expect = 3.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 69 FNFRLAVSTIHKIFNRIIVCVKIIFIS 149
FN L T+ N I+ CV I ++S
Sbjct: 227 FNITLRRKTLFYTVNLIVPCVSISYLS 253
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 22.2 bits (45), Expect = 4.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 164 SLRKVRNKNYFNTNNYSIKYFMNCRN 87
S + + N N +N NNY+ Y N N
Sbjct: 86 SNKTIHNNNNYNNNNYN-NYNYNNNN 110
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 22.2 bits (45), Expect = 4.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 464 PSPSPSVLSYPNSTIS 511
PSP+P + S P+S+ S
Sbjct: 511 PSPNPRIASAPSSSTS 526
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 22.2 bits (45), Expect = 4.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 146 NKNYFNTNNYSIKYFMN 96
N NY N NNY+ Y N
Sbjct: 331 NNNYNNYNNYNNNYNNN 347
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 22.2 bits (45), Expect = 4.7
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -1
Query: 357 LTSYSYSNLISLFKLTFESKIIKNEQLIGSQHFK 256
+TS +NL+ LF++ S + +L Q F+
Sbjct: 222 VTSIQVANLLRLFRIPLVSFFSTSPELSNKQRFE 255
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 6.1
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -2
Query: 164 SLRKVRNKNYFNTNNYS 114
S + + N N +N NNY+
Sbjct: 86 SNKTIHNNNNYNNNNYN 102
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = -2
Query: 161 LRKVRNKNYFNTNNYSIKYFMNCRN 87
+ + NK N NNY Y N N
Sbjct: 82 ISSLSNKTIHNNNNYKYNYNNNNYN 106
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = -2
Query: 161 LRKVRNKNYFNTNNYSIKYFMNCRN 87
+ + NK N NNY Y N N
Sbjct: 82 ISSLSNKTIHNNNNYKYNYNNNNYN 106
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = -2
Query: 161 LRKVRNKNYFNTNNYSIKYFMNCRN 87
+ + NK N NNY Y N N
Sbjct: 82 ISSLSNKTIHNNNNYKYNYNNNNYN 106
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,397
Number of Sequences: 438
Number of extensions: 3251
Number of successful extensions: 35
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -