Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13k14r
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   2.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.2  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 423 VWQYR**NN*SGHKYCHTVKTFL 491
           V+QYR  N     KYCH++K  L
Sbjct: 42  VYQYRCANCTYATKYCHSLKLHL 64


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +2

Query: 272 TINLLFRTADVQYLTPGTVIDSLDIGNNLAVSLILLTSM 388
           T+N++     + +LT  T     D G  + +S+ +L S+
Sbjct: 248 TVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISL 286


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +2

Query: 272 TINLLFRTADVQYLTPGTVIDSLDIGNNLAVSLILLTSM 388
           T+N++     + +LT  T     D G  + +S+ +L S+
Sbjct: 248 TVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISL 286


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 193 FRRTQVTPYNKNQIRRLSLSK 131
           +    VTPYNKN  +  S  K
Sbjct: 438 YPNASVTPYNKNYTKFCSTEK 458


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +2

Query: 272 TINLLFRTADVQYLTPGTVIDSLDIGNNLAVSLILLTSMS 391
           T+NL+     + +LT        D G  +++S+ +L S++
Sbjct: 244 TVNLIIPCMGISFLTVLVFYLPSDSGEKVSLSISILLSLT 283


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 400 VRVAHGCQQYQGHSQVVTYI*TINYSTR 317
           ++++ G     G + + TYI   NYS++
Sbjct: 182 LKMSRGSSVVTGMNNIETYIVNTNYSSK 209


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 400 VRVAHGCQQYQGHSQVVTYI*TINYSTR 317
           ++++ G     G + + TYI   NYS++
Sbjct: 182 LKMSRGSSVVTGMNNIETYIVNTNYSSK 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,266
Number of Sequences: 438
Number of extensions: 4192
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)