Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13k14f
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch...    49   5e-07
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    26   4.2  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   7.3  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   7.3  
SPAC2F3.02 |||ER protein translocation subcomplex subunit|Schizo...    25   9.7  

>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 37/116 (31%), Positives = 60/116 (51%)
 Frame = +1

Query: 310 LVVKLGSAVITREDGNGLALGRLASIIEQVAECHHEGRECIMVTSGAVAFGRQKLTQELL 489
           +V+KLG++ I  E  +   +  L+ I+E V +    G   ++V+SG +A G ++L     
Sbjct: 14  IVIKLGTSSICDEKTHEPLISNLSLIVETVVKLRKLGHNVVLVSSGGIAMGLRRL----- 68

Query: 490 MSLSMRETLSPSDHTREDAGSILDPRAAAAVGQSELMSMYDAMFSQYNVKIAQVLV 657
             L  R    PS         +   +A AAVGQ  L+S++D +F+Q    IAQVL+
Sbjct: 69  -DLPKR----PS--------KLSAVQAIAAVGQGRLISLWDTLFTQLRQPIAQVLI 111


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 524 LGDKVSRMDKDMSSSCVSFCR 462
           LGD +SR+D+D+  + V  C+
Sbjct: 110 LGDNLSRIDRDLIKNFVELCK 130


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 639 FDIVLREHGIIHRHELRLTDRRSGPRIQNAACVLSSV 529
           FD+  R   II+ H   ++D R G +  +   V SSV
Sbjct: 112 FDVNNRSERIIYNHNSSISDIRIGEKNNHYRIVFSSV 148


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 283 CQ*RFSASFQR*PMLSCLRSSHSKISRELRNFSF 182
           CQ  F  S  R P LS   S+H + S E+ ++ F
Sbjct: 122 CQFAFVISNPRKPSLSVANSAHCRFSPEIVDWGF 155


>SPAC2F3.02 |||ER protein translocation subcomplex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 484 LLMSLSM-RETLSPSDHTREDAGSILDPRAAAAVGQSE 594
           L + L++ R T  PS  TRE+A  +L  RAAA +  S+
Sbjct: 87  LALQLALNRCTWEPSILTREEASVMLCNRAAAEIALSQ 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,656
Number of Sequences: 5004
Number of extensions: 43250
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)