Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13k14f
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.5  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   2.6  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   2.6  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   4.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 552  HFGSEGRCGGRSVGA 596
            H+GS G  G RSVG+
Sbjct: 1833 HYGSRGSVGRRSVGS 1847


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 14  DADWT-IDVRYLKLK*QNIFIIYFCLLELIDRECVTNS 124
           D +W  I  +YL+    NIF+   CLL  I+ + V  S
Sbjct: 106 DLNWQPIATKYLRRYEDNIFLPEDCLLFTIELDRVLES 143


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 14  DADWT-IDVRYLKLK*QNIFIIYFCLLELIDRECVTNS 124
           D +W  I  +YL+    NIF+   CLL  I+ + V  S
Sbjct: 121 DLNWQPIATKYLRRYEDNIFLPEDCLLFTIELDRVLES 158


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 376 LASIIEQVAECHHEG 420
           +  I+E V  CHH G
Sbjct: 15  IQQILESVHHCHHNG 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,543
Number of Sequences: 438
Number of extensions: 2878
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)