Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13k12f
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    29   0.56 
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    26   5.2  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.2  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   6.9  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   6.9  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   9.1  

>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 167 ACRPSCAQHQPSPASGPACRDGTTPPRTTQRK 72
           +C P+  +H PS AS  A   GTT P++ + +
Sbjct: 160 SCLPAPDRHTPSSASSRASETGTTSPQSMRNQ 191


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +1

Query: 280 YVAQDQPRPVSWIRWHPSLLNT 345
           Y AQ Q RP S +RWH SLL+T
Sbjct: 191 YEAQ-QKRPFS-LRWHTSLLST 210


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +2

Query: 125 KQVKADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNC 268
           K    D+ + K   +D T  + +PI   +         NE + NN NC
Sbjct: 69  KSSSHDSFKAKPKNYDSTSNSNEPISFNEPDSSNSHHNNESICNNDNC 116


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 155 SCAQHQPSPASGPACRDGTTPPRTTQRKHRK 63
           S    +P PA  P   +GT  P++T+R H++
Sbjct: 907 SIKPQKPEPALKPV--EGTADPKSTKRNHQE 935


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +1

Query: 211 DRRETQVIR--KRVCHEQLQLRTQRYVAQDQPRPVSWIR 321
           DRR  Q+    K+VC + LQ+   R  A D+     W++
Sbjct: 875 DRRHVQLFADSKKVCQKWLQVMNSRSFALDRGTEKLWLQ 913


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 307 VSWIRWHPSLLNTEETIINHVF 372
           ++++R+HPS+     +I+NH F
Sbjct: 292 INFVRYHPSITPKWLSIVNHPF 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,136
Number of Sequences: 5004
Number of extensions: 48766
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)