Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13k11f
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 167 8e-43
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 111 8e-26
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 108 5e-25
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 97 1e-21
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 94 1e-20
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 92 5e-20
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 77 3e-15
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 73 2e-14
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 69 7e-13
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 68 9e-13
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 68 1e-12
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 60 2e-10
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 54 1e-08
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 28 1.2
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 27 2.1
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 6.4
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 25 8.5
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 8.5
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 167 bits (407), Expect = 8e-43
Identities = 76/127 (59%), Positives = 91/127 (71%)
Frame = +1
Query: 220 ALPRRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDY 399
ALP+RIIKE + L ++P PGI A P+E N RYF + + GP+ S +Y
Sbjct: 2 ALPKRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEY 61
Query: 400 PMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLA 579
PM P VRF+TKIYHPN+D+LGRICL LK WSPALQIRTVLLSIQAL+ APNPDDPL
Sbjct: 62 PMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLD 121
Query: 580 NDVAELW 600
NDVA++W
Sbjct: 122 NDVAKIW 128
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 111 bits (267), Expect = 8e-26
Identities = 55/124 (44%), Positives = 73/124 (58%)
Frame = +1
Query: 229 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 408
+RI +E L ++P SA P + ++ + GP DS DYP
Sbjct: 4 KRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 409 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 588
PKV F T+IYHPNI+ G ICLDIL+D+WSPAL I VLLSI +LL+ PNPDDPL ++
Sbjct: 64 PPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
Query: 589 AELW 600
A ++
Sbjct: 124 AHVY 127
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 108 bits (260), Expect = 5e-25
Identities = 52/128 (40%), Positives = 73/128 (57%), Gaps = 1/128 (0%)
Frame = +1
Query: 220 ALPRRIIKETQRLMQEPVPGISAVP-SETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXD 396
++ +R+ E LM PGISA P S++N ++ +TGP D+ +
Sbjct: 28 SVTKRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPAN 87
Query: 397 YPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 576
YP S P + F + ++HPN+D G ICLDILKDKWS ++T+LLS+Q+LL PN PL
Sbjct: 88 YPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPL 147
Query: 577 ANDVAELW 600
AELW
Sbjct: 148 NAQAAELW 155
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 97.5 bits (232), Expect = 1e-21
Identities = 41/123 (33%), Positives = 70/123 (56%)
Frame = +1
Query: 229 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 408
RR++++ +R+ Q+P G+SA P N ++ ++ GP D+ YP
Sbjct: 7 RRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNK 66
Query: 409 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 588
P V+F++ ++HPN+ G +CLDIL+++WSP + +L SIQ+LL+ PN P +
Sbjct: 67 PPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEA 126
Query: 589 AEL 597
A+L
Sbjct: 127 AQL 129
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 94.3 bits (224), Expect = 1e-20
Identities = 47/123 (38%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Frame = +1
Query: 229 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 408
RR+ KE L + P+P I + N ++ GP DS DYP
Sbjct: 10 RRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQ 69
Query: 409 APKVRFITKIYHPNIDRLGRICLDILKDK-WSPALQIRTVLLSIQALLSAPNPDDPLAND 585
P + F T+IYHPN D G +CL ILK + + P++++R+VL I LL PNPDDPL
Sbjct: 70 PPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVAS 129
Query: 586 VAE 594
+AE
Sbjct: 130 IAE 132
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 92.3 bits (219), Expect = 5e-20
Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Frame = +1
Query: 229 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 408
RRI KE + Q+ GI + + + GPE + DYP
Sbjct: 7 RRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFR 66
Query: 409 APKVRFITKIYHPNID-RLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 585
PK+ F TKIYHPN+ + G ICLDILKD+WSP +++ L+S+Q+LL P P +P
Sbjct: 67 PPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQ 126
Query: 586 VAELW 600
VA+++
Sbjct: 127 VAQVY 131
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 76.6 bits (180), Expect = 3e-15
Identities = 30/66 (45%), Positives = 45/66 (68%)
Frame = +1
Query: 394 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 573
+YP PKV+ + KIYHPNID G +CL+IL+ W+P L + ++L+ +Q L +PN +DP
Sbjct: 79 NYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDP 138
Query: 574 LANDVA 591
L + A
Sbjct: 139 LNKEAA 144
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 73.3 bits (172), Expect = 2e-14
Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Frame = +1
Query: 229 RRIIKETQRLMQEPVPGISAVPSETNARYFH--VIVTGPEDSXXXXXXXXXXXXXXXDYP 402
+R+ KE + G+ + T+ FH ++ GP ++ YP
Sbjct: 6 KRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYP 65
Query: 403 MSAPKVRFITKIYHPNIDRL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLA 579
+S P V F TKI HPNI G +C+DILK WSPA +++ L+I +LLS + PL
Sbjct: 66 ISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLN 125
Query: 580 NDVAEL 597
D A+L
Sbjct: 126 VDAAKL 131
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 68.5 bits (160), Expect = 7e-13
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Frame = +1
Query: 214 MAALPRRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXX 393
M++ RRI + +L+ ++ V N + F+V GP ++
Sbjct: 1 MSSPRRRIETDVMKLLMSDYE-VTLV--NDNMQEFYVRFHGPSETPYSGGIWKVHVELPS 57
Query: 394 DYPMSAPKVRFITKIYHPNIDRL-GRICLDILKDKWSPALQIRTVL-LSIQALLSAPNPD 567
+YP +P + F+ +I+HPNID L G +CLD++ WSP + + + + LL PN
Sbjct: 58 EYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNAS 117
Query: 568 DPLANDVAEL 597
DPL + A L
Sbjct: 118 DPLNGEAAAL 127
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 68.1 bits (159), Expect = 9e-13
Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Frame = +1
Query: 229 RRIIKETQRLMQEPVPGISAVPSETNARY-FHVIVTGPEDSXXXXXXXXXXXXXXXDYPM 405
RR++KE + L + GI+A PS + + + ++ GP+ + DYP+
Sbjct: 8 RRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPL 67
Query: 406 SAPKVRFITKIYHPNIDRLGRICLDIL-------------KDKWSPALQIRTVLLSIQAL 546
P ++F + +HPN+ + G +C+ IL ++WSP + +LLS+ ++
Sbjct: 68 GPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSM 127
Query: 547 LSAPNPDDPLANDVAELW 600
L+ PN + D ++W
Sbjct: 128 LAEPNDESGANIDACKMW 145
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 67.7 bits (158), Expect = 1e-12
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 14/132 (10%)
Frame = +1
Query: 241 KETQRLMQEPVPGISA-VPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPK 417
K+ + + + P G S + + + + V++ GPED+ DYP+ PK
Sbjct: 12 KQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPK 71
Query: 418 VRFITKIYHPNIDRLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAP 558
++F T+I+HPN+ G +C+ IL ++W P T+L+S+ ++LS+P
Sbjct: 72 MKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSP 131
Query: 559 NPDDPLANDVAE 594
N + P D A+
Sbjct: 132 NDESPANIDAAK 143
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 60.5 bits (140), Expect = 2e-10
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Frame = +1
Query: 394 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 567
+YP PK RF ++HPN+ G +CL IL ++ W PA+ I+ +LL IQ LL PN
Sbjct: 67 EYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIA 126
Query: 568 DP 573
P
Sbjct: 127 SP 128
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 54.4 bits (125), Expect = 1e-08
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Frame = +1
Query: 229 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 408
+R++KE L + PV + A P+ N +H I+TGP D+ DYP
Sbjct: 8 KRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFK 67
Query: 409 APKVRFITKIYHPNIDRLGRICL---DILKDKWSPALQIRTVLLSIQALLSA 555
P +R IT R+CL D W+P+ + T+L+ + + +++
Sbjct: 68 PPAIRMITP--SGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMTS 117
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 27.9 bits (59), Expect = 1.2
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Frame = +1
Query: 316 FHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNID-RLGRI---CLDI 483
++ + GP S +YP + P V F+++I P +D G++ +D
Sbjct: 41 WNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGETGKVNPHKIDC 100
Query: 484 LKDKWSPALQIRTVLLSIQ 540
L+ W + TVLL ++
Sbjct: 101 LR-HWKREYSMETVLLDLK 118
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 421 RFITKIYHPNIDRLGRICLDILKDKW 498
+FI ++HP+ RL R+C + + W
Sbjct: 219 KFILSVFHPDAARLYRLCSSLKRICW 244
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +1
Query: 406 SAPKVRFITKIYHPNIDRLGRICLDI 483
++P V +TK+ HP +G + + I
Sbjct: 393 NSPSVSLLTKVLHPKYHLIGNVAVQI 418
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 469 ICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 570
+CL K KW + + + IQALL + NPD+
Sbjct: 111 LCL-YRKSKWKKQI-VGEAYIGIQALLLSTNPDE 142
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 448 NIDRLGRICLDILKDKWSPALQ 513
N D + IC DIL+++W LQ
Sbjct: 416 NEDEVKSICGDILENRWKSLLQ 437
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,748
Number of Sequences: 5004
Number of extensions: 43963
Number of successful extensions: 108
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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