Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13k10f
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    35   0.011
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    32   0.060
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    32   0.060
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ...    31   0.10 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   0.74 
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi...    27   1.7  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   5.2  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    26   5.2  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   6.9  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    25   6.9  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    25   9.1  

>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 34.7 bits (76), Expect = 0.011
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = +1

Query: 214 IQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSANVNVA- 390
           I + N+     +D +  +F   G+  DI L   +RD          ++KY D  +  +A 
Sbjct: 33  IYIGNLDFDLNEDDILCVFSEFGEPVDINL---VRDKETGKSKGFAFLKYEDQRSTVLAV 89

Query: 391 QHMTNTVFIDRALIVIPVQSGEIPDEHK 474
            +MTN   +DR + V  V S ++P + K
Sbjct: 90  DNMTNVKLLDRLVRVDHVASYKVPQKEK 117


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 32.3 bits (70), Expect = 0.060
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
 Frame = +1

Query: 208 RVIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKY-YDSANVN 384
           R I V N+    TK+ +  +FG  G ID I   P  +     +    CY++Y Y     N
Sbjct: 99  RTILVENLTRNVTKEHIAEIFGIYGLIDHI-FMPIYK--KSELNKGYCYIEYVYHDQAAN 155

Query: 385 VAQHMTNTVFIDRALIV 435
               M N       L V
Sbjct: 156 AVDKMNNAELDGEELFV 172


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 32.3 bits (70), Expect = 0.060
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = +1

Query: 181 SSKMVSGSTRVIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVK 360
           S  M   + R + V N+A +A ++ +   FG  G ID +R+   +RD    +     Y++
Sbjct: 261 SHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRI---VRDPKTNLGKGFAYIQ 317

Query: 361 YYDSANVNVA 390
           + D+  V+ A
Sbjct: 318 FKDTMGVDKA 327



 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 352 YVKYYDSANVNVAQHMTNTVFIDRALIVIPVQSGEIPDEHK 474
           Y+ + DS++   A  +  T+F+DR L V  V S  +P + K
Sbjct: 230 YIVFRDSSSARSALSLNGTMFMDRHLRVDSV-SHPMPQDTK 269


>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +1

Query: 202 STRVIQVTNIAPQATKDQMQTLFGYLGKIDDI 297
           S +VI VTNI+P+ T+ Q+   F + GK+ +I
Sbjct: 2   SNQVI-VTNISPEVTEKQISDFFSFCGKVSNI 32


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 193 VSGSTRVIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPT 312
           +S  +  + V N++  AT+D + T FG  G I  IRL PT
Sbjct: 361 LSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRL-PT 399


>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 137

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/75 (24%), Positives = 37/75 (49%)
 Frame = +1

Query: 211 VIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSANVNVA 390
           ++ + N++ + T ++M  LFG  G +  IRL  T++       + + Y    D+      
Sbjct: 13  ILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRG---TAFVVYENVQDAR--RAC 67

Query: 391 QHMTNTVFIDRALIV 435
           + ++   F+DR L+V
Sbjct: 68  EKLSGYNFMDRYLVV 82


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 214 IQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVK 360
           + VTN  P   +  +  LF   G + D+R +P++R        R CYV+
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVR-FPSLR---YNTNRRFCYVQ 712


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 535 LPMHVINTLDGIPPNQVIQTHDANLTAAGLPP 630
           LP  + ++++GIP   +I T  A+L  A  PP
Sbjct: 120 LPPDIPDSIEGIPGCHIIYTLTASLERATQPP 151


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 313 IRDVSC-PVQSRI-CYVKYYDSANVNVAQHMTNTVFIDRALIVIP 441
           ++D SC  V++   C+VKY+   +V  + H  + +   R L  +P
Sbjct: 7   VKDTSCLKVRTSYKCFVKYFPKCSVQSSFHSYDELAFSRRLYNLP 51


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 541 WAVLVLQNLTPVPRFHYWTFRALCVH 464
           W  L+LQN  P P  H      L VH
Sbjct: 346 WVELILQNPDPTPAIHIARACLLAVH 371


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +1

Query: 445 QSGEIPDEHKALEMSSNGTL---VPGLSSVEPR 534
           QSG++P++    ++ SNG L    P  S+  PR
Sbjct: 76  QSGQLPNQQLLQQLQSNGALQQGTPEPSNTRPR 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,106
Number of Sequences: 5004
Number of extensions: 53627
Number of successful extensions: 157
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)