Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13j23f
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    28   1.3  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    27   3.0  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   4.0  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   4.0  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   4.0  
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    26   5.3  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    25   9.2  

>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 416 ALTRKTYQYIMERLKNVNTYAYNQPELKNFFYVYKNY 526
           A  + T   +++R KN N  + N+  LK FF   +N+
Sbjct: 77  ARLKHTQSDLIDRFKNANLKSVNEENLKKFFSELENH 113


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 387 YNCSLVSPFAPSAKMAKIAEYPRGENAMFSLSSM*PCNIAVDSSLE 250
           YN  LV+ FAP AK   I +  +  N +FSL+      + ++  LE
Sbjct: 5   YN-ELVNQFAPGAKQITIKKIRKKGNGIFSLNRYTSGTVLLEVPLE 49


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 486 NRSSRTSSMFTKIIQSTMNTERF-WKNII*QMLDQLKNT 599
           N+ +R+  M T+II +  + + + W+NI  Q L QL+NT
Sbjct: 429 NKDARSQFM-TEIINNIRSIKLYAWENIFLQKLLQLRNT 466


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 519 KIIQSTMNTERFWKNII*Q-MLDQLKNTIQN 608
           K I+  +N E+F KN+I Q ++D  K+ I+N
Sbjct: 24  KRIKRLINNEQFCKNVILQKLVDSTKDIIEN 54


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 362 KGETREQLYNALHLPQDPALTRKTYQYIMERLKNVNTYAYNQPELKNFFYVYKN 523
           KG T E+L + LH   +   T   YQ +++     N+ +YN    K    ++K+
Sbjct: 479 KGYTIERLIHGLHAVYNDINTEWDYQNLLKGYGAKNSRSYNIHSEKELLDLFKD 532


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 233 SFIGDASSELSTAILQGYIDDNENIAFSPLGYSAILAILAEGAKGETR 376
           S I  A + +S+ I+      N++  FS +   A+L++    +KGETR
Sbjct: 152 SLINVAKTSMSSKII-----GNDSDFFSTMAVDAMLSVKTSNSKGETR 194


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 242 GDASSELSTAILQGYIDDNENIAFSPLGYSAILAILAEGAKGE 370
           GD ++ +S A L   + D E + F P G      ++ EG +GE
Sbjct: 267 GDGNAMVSRAGLP--LQDLEFVQFHPTGIYGAGCLITEGCRGE 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,889
Number of Sequences: 5004
Number of extensions: 55896
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)