Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13j23f
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.5  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.5  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.6  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 468 FTFLSLSMMYWYVFL 424
           F+FL L+++YW  FL
Sbjct: 369 FSFLILNVVYWSTFL 383



 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 249 LPVNYLQLYYRVTLMTMKTSRFLLSDTLLF 338
           +P +YL LY+  TL+ M     +LS  + F
Sbjct: 107 IPNHYLWLYHDKTLLYMSKLTLVLSCAMKF 136


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -2

Query: 550 LSVFIVDCIIFVNIEEVLELRLIVCVSVYIFESLHDVLVCFSCQSWVLGQ-MKCIIQLFS 374
           LSV +V  +  + I   +   ++VCV++Y    L  +   F     +    + C++  F+
Sbjct: 23  LSVLLVGFLFLILIFLSVAGNILVCVAIYTDRGLRRIGNLFLASLAIADLFVGCLVMTFA 82

Query: 373 GL 368
           G+
Sbjct: 83  GV 84


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = +2

Query: 440 YIMERLKNVNTYAYNQPELKNFFYVYKNYTVNDE 541
           Y      N N Y  N     N    YKNY +N E
Sbjct: 322 YKYSNYNNYNNYNNNNYNNYNKKLYYKNYIINIE 355


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 479 YNQPELKNFFYVYKNYTVNDE 541
           YN     N+  +YKNY +N E
Sbjct: 105 YNNNYNNNYKKLYKNYIINIE 125


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 479 YNQPELKNFFYVYKNYTVNDE 541
           YN     N+  +YKNY +N E
Sbjct: 105 YNNNYNNNYKKLYKNYIINIE 125


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 400 SAPRPSFDKKNIPIHHGE 453
           S P+   DK+++  HHG+
Sbjct: 369 SRPQYQIDKRSMGSHHGQ 386


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,329
Number of Sequences: 438
Number of extensions: 3824
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)