Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13j13f
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p...    33   0.027
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.8  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    27   3.1  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    26   5.3  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   9.3  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   9.3  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   9.3  

>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 359

 Score = 33.5 bits (73), Expect = 0.027
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
 Frame = +2

Query: 386 YHCEYRDEIWKSLLEQEAE-KSPIHL--QSPQLQF--RGSLVQQLRDATKKLGLTIATLH 550
           Y  EY+++I   L+ +E      +HL  Q P+L++  R +LV  + +      L+I TL 
Sbjct: 92  YLGEYQEDIIHHLITREKNFLLNVHLSNQQPELRWSMRPALVNFIVEIHNGFDLSIDTLP 151

Query: 551 SAVSLLDLFMDAHRLRADRLTHVALACLSLAA 646
            ++SL+D ++    +    +  VA  CL +A+
Sbjct: 152 LSISLMDSYVSRRVVYCKHIQLVACVCLWIAS 183


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +2

Query: 416 KSLLEQEAEKSPIHLQSPQLQFRGSLVQQLRDATKKLGLTI-ATLHSAVSLLDLFMDAHR 592
           K+ L+ E EK+PI+L+S  L    SLV +   AT  LG     T   A+ LL+L     +
Sbjct: 481 KARLKSELEKAPINLRSSCLHAIYSLVNRPPFAT--LGHVFHNTPMKAIGLLNLICSNVQ 538

Query: 593 LRADRLTHV 619
             ++R+ H+
Sbjct: 539 DLSNRILHL 547


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 45   HVMK*NKKYFHVFDDSRRYIVVLSDVS 125
            H+M+  K+ + V +D   YI VLSD++
Sbjct: 1023 HLMQRIKQSYDVIEDGNNYIYVLSDMA 1049


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 3   FFFVKDAKPRSDRCHVMK*NKKYFHVFDDSRRYIVVLSDVSVQNKD 140
           FFF  +  P+SD   ++    +++ V  D ++YI    + SV N D
Sbjct: 210 FFFDGNYLPKSDALDIIAQCHQHWKVSRDRKQYIKNFHNESVNNVD 255


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 117 HLEQQYSGVNHQIRENTFYFISSHGSGPT 31
           H+  Q+S +++ +  N   ++ SH +GPT
Sbjct: 594 HMAGQFSYLSNSLLLNVHRYVESHLNGPT 622


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 140 LILAVIIYFCSALSFDTSIHVVNVRKVDVLNFYLHFGEMETLNMAKLNL 286
           LI AV  Y C AL+ +   HV+ V ++    F+L   E++    ++L +
Sbjct: 442 LIDAVKQYICLALAKNVVSHVLPVFEISCEIFWLILSELKNFFKSELEV 490


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 278 LNLSSVRPHASTESGPKVEVADPKMNP 358
           LN+SSV+    TE+ P  E   P  +P
Sbjct: 184 LNISSVKQDRITEANPTCEKRKPSRSP 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,758
Number of Sequences: 5004
Number of extensions: 45972
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)