Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13j11f
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 44 2e-05
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 43 5e-05
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 33 0.028
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 32 0.064
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 31 0.15
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 30 0.26
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 30 0.26
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 30 0.26
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 30 0.26
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 29 0.45
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 29 0.78
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 28 1.0
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 28 1.0
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 27 2.4
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos... 27 2.4
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An... 27 2.4
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.2
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po... 27 3.2
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 27 3.2
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 26 5.5
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.5
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 26 5.5
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 26 5.5
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 25 7.3
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 25 7.3
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 7.3
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 25 9.7
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p... 25 9.7
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 25 9.7
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 25 9.7
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 25 9.7
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 25 9.7
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 44.0 bits (99), Expect = 2e-05
Identities = 23/76 (30%), Positives = 41/76 (53%)
Frame = +2
Query: 431 ELSDTQGSWVASLLCLGAVFGAVPSGLISEYFGRKKTXXXXXXXXXVSWILVASSPNVYG 610
EL++ ++ S LGA+ G + +G ++++FGRK V I+ ++ +++
Sbjct: 123 ELTNGGKEFITSATSLGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIVQVTAHHLWH 182
Query: 611 LYVGRFVGGIAVGAFS 658
+ VGRFV G VG S
Sbjct: 183 MIVGRFVIGWGVGIAS 198
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 42.7 bits (96), Expect = 5e-05
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +2
Query: 434 LSDTQGSWVASLLCLGAVFGAVPSGLISEYFGRKKTXXXXXXXXXVSWILVASSPNVYGL 613
LS Q + S A+ A SG ++++ GRK+ + +++A+S NV +
Sbjct: 117 LSSGQKELITSATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMM 176
Query: 614 YVGRFVGGIAVGAFS 658
VGRF+ G +G S
Sbjct: 177 VVGRFIVGYGIGLTS 191
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 33.5 bits (73), Expect = 0.028
Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Frame = +2
Query: 368 TPIPDWAEQNSTYDENFKTRLELSDTQGSWVASLLCLGAVFGAVPSGLISEYFGRKKTXX 547
T + D+ E+ + + + LS + + ++ +G++FG + S I++ FG++ +
Sbjct: 35 TSMRDFRERYADRYDPITDQYSLSSARQGLLTGMVNVGSLFGCIISSPIADRFGKRLSII 94
Query: 548 XXXXXXXVSWIL-VASSPNVYGLYVGRFVGGIAVGAFS 658
+ I+ V + P+ + V + GI +GA S
Sbjct: 95 GFCAVYIIGIIVQVTAVPSWVQIMVAKIWTGIGIGALS 132
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 32.3 bits (70), Expect = 0.064
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 479 GAVFGAVPSGLISEYFGRKKTXXXXXXXXXVS-WILVASSPNVYGLYVGRFVGGIAVGAF 655
G +FGA+ S +E G+K + ++ +LV + P+ + VG+ + G+ +GA
Sbjct: 68 GCLFGAMLSSPFTERIGKKYSICFFSGVYIIAELLLVTAVPSWIQVLVGKILAGVGIGAL 127
Query: 656 S 658
S
Sbjct: 128 S 128
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 31.1 bits (67), Expect = 0.15
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 479 GAVFGAVPSGLISEYFGRKKTXXXXXXXXXVSWILVASS-PNVYGLYVGRFVGGIAVGAF 655
G +FGA+ S +E G+K + + IL+ ++ P+ + VG+ G+ +GA
Sbjct: 68 GCLFGAMLSSPFTEAIGKKYSIAFFSGCYIIGQILLVTAVPSWVQIMVGKLFTGLTIGAL 127
Query: 656 S 658
S
Sbjct: 128 S 128
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 30.3 bits (65), Expect = 0.26
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = +2
Query: 413 NFKTRLELSDTQGSWVASLLCLGAVFGAVPSGLISEYFGRKKTXXXXXXXXXVSWILVAS 592
N + S T + A+L LG +FG + +SE FGR+ + I +A
Sbjct: 68 NIAEQFHASRTLVTLGATLYTLGILFGNLIFAPLSEQFGRRPIYLIGYSVFALLQIPIAL 127
Query: 593 SPNVYGLYVGRFVGGI 640
S N+ V RF G+
Sbjct: 128 SVNLAMFLVFRFFSGL 143
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 30.3 bits (65), Expect = 0.26
Identities = 17/72 (23%), Positives = 29/72 (40%)
Frame = +2
Query: 443 TQGSWVASLLCLGAVFGAVPSGLISEYFGRKKTXXXXXXXXXVSWILVASSPNVYGLYVG 622
+Q SW A+ + G + +GRKKT + L +S +++ L
Sbjct: 124 SQVSWTATAYMISCTAFQPLFGKFCDIYGRKKTLLAAYCVFGIGCFLCGTSRSLWQLVAA 183
Query: 623 RFVGGIAVGAFS 658
R + GI G +
Sbjct: 184 RAIAGIGGGGMN 195
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 30.3 bits (65), Expect = 0.26
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = +2
Query: 413 NFKTRLELSDTQGSWVASLLCLGAVFGAVPSGLISEYFGRKKTXXXXXXXXXVSWILVAS 592
N + S T + A+L LG +FG + +SE FGR+ + I +A
Sbjct: 68 NIAEQFHASRTLVTLGATLYTLGILFGNLIFAPLSEQFGRRPIYLIGYSVFALLQIPIAL 127
Query: 593 SPNVYGLYVGRFVGGI 640
S N+ V RF G+
Sbjct: 128 SVNLAMFLVFRFFSGL 143
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 30.3 bits (65), Expect = 0.26
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = +2
Query: 413 NFKTRLELSDTQGSWVASLLCLGAVFGAVPSGLISEYFGRKKTXXXXXXXXXVSWILVAS 592
N + S T + A+L LG +FG + +SE FGR+ + I +A
Sbjct: 68 NIAEQFHASRTLVTLGATLYTLGILFGNLIFAPLSEQFGRRPIYLIGYSVFALLQIPIAL 127
Query: 593 SPNVYGLYVGRFVGGI 640
S N+ V RF G+
Sbjct: 128 SVNLAMFLVFRFFSGL 143
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 29.5 bits (63), Expect = 0.45
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 344 TEYGKDYTTPIPDWAEQNSTYDENFKTRLELSDT 445
+E GK++TTP+ D E +T+ ++ +E +T
Sbjct: 391 SEEGKNFTTPLSDSVESENTWSNTLRSSVEDDNT 424
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 28.7 bits (61), Expect = 0.78
Identities = 21/59 (35%), Positives = 26/59 (44%)
Frame = -1
Query: 639 IPPTNLPTYKP*TFGLEATRIQETSSGKAKYSNVFFLPKYSEIRPEGTAPNTAPKHKSD 463
IP N P Y+P E Q +G N + L YS+ PEGTA + A H D
Sbjct: 169 IPLNNSP-YRP-----EDAYFQLQGAGVKADINPYNLSPYSQYGPEGTAYSNAQAHHQD 221
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -2
Query: 539 SFSYRSIRKSGQRVQRQTPLPNTRVTPPRILGYLTTPD 426
S ++ K R+ + +P+ +PP+++ YLT+PD
Sbjct: 350 SLTFAEAYKRTGRILNISVIPSDVHSPPKLINYLTSPD 387
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +2
Query: 266 TGIVNLGAFAAGVCVAWSSSALPLLITEYGKDYTTPIPDWAEQNSTY 406
TG G AA VC + LL+ E Y + I +W + Y
Sbjct: 281 TGTSGGGLLAALVCTRTNEELKQLLVPELASKYQSDIGNWLDATKRY 327
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +2
Query: 476 LGAVFGAVPSGLISEYFGRKKTXXXXXXXXXVSWILVASSPNVYGLYVGRFV 631
+G VFG + G + ++FGRK ++ +LV + P +G+ +
Sbjct: 99 IGNVFGQILFGFMGDFFGRKFVYGKEMIVVIIATVLVIALPKSIPTPLGKMM 150
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 476 LGAVFGAVPSGLISEYFGRKKTXXXXXXXXXVSWILVASSP 598
+G +FG + G + ++FGRK ++ +LV + P
Sbjct: 104 IGNIFGQLLFGFMGDFFGRKFVYGKEMVIVIIATVLVIAMP 144
>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 425
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 516 EIRPEGTAPNTAPKHKSDATQDPWVSDNS 430
EI +GT N A K +D Q PWV +++
Sbjct: 375 EIVLDGTNMNYAEKRSADYYQQPWVHESA 403
>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
family |Schizosaccharomyces pombe|chr 2|||Manual
Length = 430
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Frame = +2
Query: 371 PIPDWAEQNSTYDEN----FKTRLELSDTQG 451
P+PDW YD N +T L+L+DT G
Sbjct: 250 PLPDWLGNEQPYDLNSWAESETALQLADTLG 280
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 323 SALPLLITEYGKDYTTPIPDWAEQNSTYD 409
+A L++ EYG ++ T P W +T+D
Sbjct: 2034 NASSLVLNEYGCEHNTVWPPWVPFETTFD 2062
>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 308 VAWSSSALPLLITEYGKDYTTPIPDW 385
+AW+S L T Y D P P+W
Sbjct: 234 IAWASDKRRFLKTNYSPDDVAPPPNW 259
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 476 LGAVFGAVPSGLISEYFGRKKTXXXXXXXXXVSWILVASSP 598
+G +FG + G + ++FGRK ++ IL+ + P
Sbjct: 104 IGNIFGQLMFGFMGDFFGRKFVYGKEMIIVIIATILLIAMP 144
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 5.5
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +3
Query: 72 SRQLRLCFGTDKWKNKVHR---LWKPKHCRGMWNSGTVKMATPKSSS-AWRQFRISKG 233
+R+LR F +D+WKN+V+ L ++ S + +P+ SS A RQF+ + G
Sbjct: 332 TRELRDFFTSDEWKNQVNESNPLGMGGQVASIFASLIKSLYSPEHSSFAPRQFKATIG 389
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 226 QKGYIRNHHAICGHRYSEPWCFCRW 300
QK +R + CGH + C CRW
Sbjct: 26 QKDGLRAQLSPCGHDQFDYSCICRW 50
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 528 PKYSEIRPEGTAPNTAPKHKSDATQDP 448
P Y EI P TA NT+P S + P
Sbjct: 181 PYYHEIEPPRTASNTSPTPNSIKSAHP 207
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 106 LSVPKHKRSCLDFNEINKLQSTRNPLHD 23
L+ PKH CLDF + ++Q+ +NPL +
Sbjct: 4 LTRPKH--CCLDFLLMAEIQTAQNPLKE 29
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 293 QKHQGSLYRCPHIAW 249
QKH GS++RC IA+
Sbjct: 634 QKHSGSVFRCGSIAY 648
>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 7.3
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = -1
Query: 297 AAKAPRFTIPVPTYCVVI--PDVSLLISGIVSMRTRTLGWPF*LSRCSTSLDSASASKVD 124
AA A + P CVV+ P V ++G+ + +T WP L S+ +
Sbjct: 55 AATAYGYLTQRPGVCVVVGGPGVVHAMAGVFNSKTNR--WPLLLLAGSSETFQQNCGAFQ 112
Query: 123 ELCSSIYRSQNTSEAV 76
EL Y S +T AV
Sbjct: 113 ELDQVSYLSPHTKLAV 128
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 458 VASLLCLGAVFGAVPSGLISEYFGRK 535
V SL +G FG + G +S+ FGRK
Sbjct: 130 VQSLFIVGNAFGPMLLGPMSDIFGRK 155
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 410 ENFKTRLELSDTQGSWVASLLCL 478
+++KTR+ L GS+ S++CL
Sbjct: 104 DDYKTRITLRSPSGSYRGSVVCL 126
>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 539
Score = 25.0 bits (52), Expect = 9.7
Identities = 19/76 (25%), Positives = 31/76 (40%)
Frame = +2
Query: 410 ENFKTRLELSDTQGSWVASLLCLGAVFGAVPSGLISEYFGRKKTXXXXXXXXXVSWILVA 589
E+ L++ + SL+ +G G + +SE GR+ V I A
Sbjct: 126 EDVSRDLKVGPEVANLSCSLMVVGFGIGPLVISPLSEMIGRRIVYLVTLMIYIVLQIPCA 185
Query: 590 SSPNVYGLYVGRFVGG 637
+PN+ L + RF G
Sbjct: 186 LAPNIACLLIVRFFCG 201
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +3
Query: 93 FGTDKWKNKVHRLWKPKHCRGMWNSGTVKMATPKSSSA 206
+GT + K HR + C G W+ V+ ++ +A
Sbjct: 233 WGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNA 270
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 280 VHYTGAHILRGDSGCIPFDIRNCLH 206
VH+ G + D GC+PF C H
Sbjct: 125 VHHEGTCEICYDEGCLPFFSAECDH 149
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +3
Query: 93 FGTDKWKNKVHRLWKPKHCRGMWNSGTVKMATPKSSSA 206
+GT + K HR + C G W+ V+ ++ +A
Sbjct: 233 WGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNA 270
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -1
Query: 534 FLPKYSEIRPEGTAPNTAPKHKSDATQDPWVSDNSRRV 421
FL KY E R AP+ D+ P +SD R+
Sbjct: 481 FLQKYPEYRENTILLQVAPESLQDSEHLPHISDIVTRI 518
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,153,814
Number of Sequences: 5004
Number of extensions: 73050
Number of successful extensions: 253
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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