Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13i18f
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    25   7.3  
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ...    25   9.6  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.6  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    25   9.6  

>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 187 LFDTHLASVFVTVLYTSLMRIFNNNNI 267
           +F T   S  + V Y  ++R+FN NN+
Sbjct: 308 IFWTSSQSSLMFVFYEGIIRLFNKNNV 334


>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 26  PFESKPTSPARGAPCRPTNEA 88
           P  S PT+PA   P  PT E+
Sbjct: 233 PASSTPTAPAEKEPTAPTTES 253


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 453 HYNNGFLDYIKNDKDIENLHLNRP*EP 373
           +++N     +KN  DI+ LH+NR  +P
Sbjct: 14  YFSNKKKPTVKNTSDIDLLHINRGRQP 40


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 166 DHATFFFLFDTHLASVFVTVLY--TSLMRIFN 255
           DH  F  L+DT L S F  V++  T+  R +N
Sbjct: 374 DHVNFALLWDTSLESSFNFVMHDATTFARYYN 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,853
Number of Sequences: 5004
Number of extensions: 49928
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)