Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13i13f
(645 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 142 3e-36
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 142 3e-36
EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein. 136 2e-34
EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein. 136 2e-34
AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein. 109 3e-26
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 103 1e-24
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 103 1e-24
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 92 5e-21
AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase prot... 84 1e-18
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 26 0.36
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 26 0.36
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 26 0.36
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 25 0.63
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 24 1.4
M29491-1|AAA27726.1| 79|Apis mellifera protein ( Bee homeobox-... 22 4.4
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 21 7.7
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 21 7.7
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 21 7.7
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 21 7.7
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 21 7.7
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 21 7.7
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 21 7.7
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 21 7.7
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 21 7.7
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 142 bits (344), Expect = 3e-36
Identities = 79/216 (36%), Positives = 116/216 (53%), Gaps = 6/216 (2%)
Frame = +1
Query: 16 YTQEALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSKEELKSSPHGYKVRQPRLNHK 195
YT E L+F G+ I V VDK++T+FDHF+ N V + K+ K RQ RLNHK
Sbjct: 438 YTTEELNFPGVSIESVTVDKLITYFDHFESMLNNGVSI-QSHAKAKNTMIKARQYRLNHK 496
Query: 196 PFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQIT 375
PFT I + SD +V++FLGPKYDE G L N+MNF ++D FV + G + I
Sbjct: 497 PFTYHIVVNSDKNVKGMVRIFLGPKYDEFGHEVDLVHNYMNFMQMDEFVVNLKSGSNTIE 556
Query: 376 RSSTDFAFFKEDSLPMAEIYKLLDQGKIPTDMFNSSDT---MPSRLMLPKGTYDGFPFQL 546
R+S + F D +P +Y L + ++ F S P RL+LPKG +G P+ +
Sbjct: 557 RNSHESVFVVPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGFPERLLLPKGKKEGMPYNV 616
Query: 547 FVFVYPYEPT---PKESEPFKSVVPDNKPFGYPFDR 645
V V P++ + +S + + D + G+P D+
Sbjct: 617 LVVVSPFDDSNVVQIDSPVWGRHIYDGRAMGFPLDK 652
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 142 bits (344), Expect = 3e-36
Identities = 79/216 (36%), Positives = 116/216 (53%), Gaps = 6/216 (2%)
Frame = +1
Query: 16 YTQEALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSKEELKSSPHGYKVRQPRLNHK 195
YT E L+F G+ I V VDK++T+FDHF+ N V + K+ K RQ RLNHK
Sbjct: 438 YTTEELNFPGVSIESVTVDKLITYFDHFESMLNNGVSI-QSHAKAKNTMIKARQYRLNHK 496
Query: 196 PFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQIT 375
PFT I + SD +V++FLGPKYDE G L N+MNF ++D FV + G + I
Sbjct: 497 PFTYHIVVNSDKNVKGMVRIFLGPKYDEFGHEVDLVHNYMNFMQMDEFVVNLKSGSNTIE 556
Query: 376 RSSTDFAFFKEDSLPMAEIYKLLDQGKIPTDMFNSSDT---MPSRLMLPKGTYDGFPFQL 546
R+S + F D +P +Y L + ++ F S P RL+LPKG +G P+ +
Sbjct: 557 RNSHESVFVVPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGFPERLLLPKGKKEGMPYNV 616
Query: 547 FVFVYPYEPT---PKESEPFKSVVPDNKPFGYPFDR 645
V V P++ + +S + + D + G+P D+
Sbjct: 617 LVVVSPFDDSNVVQIDSPVWGRHIYDGRAMGFPLDK 652
>EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein.
Length = 684
Score = 136 bits (329), Expect = 2e-34
Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 5/219 (2%)
Frame = +1
Query: 4 YQVPYTQEALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSKEELKSSPHGYKVRQPR 183
+Q PY ++ + + LKI VDK++T+F+ FD N + ++ P K+RQ R
Sbjct: 435 HQKPYNKDEIIYPNLKIESFTVDKLITYFEQFDTTINNGLLLEEQRNDDKPFLIKIRQYR 494
Query: 184 LNHKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQ 363
LNHKPF I I +D A +++F+GPKYD + + ++ FYE+D ++ +N G
Sbjct: 495 LNHKPFNFHITINADKPMKAAIRIFIGPKYDSHHKLIEIPEDLKYFYEIDNWMLDLNSGL 554
Query: 364 SQITRSSTDFAFFKEDSLPMAEIYKLLDQGKIPTDMFNSSDTM---PSRLMLPKGTYDGF 534
++ITR+S D F D P Y+ ++ F ++ + P RL+LP+G +G
Sbjct: 555 NKITRNSLDCFFTMNDLEPSEIFYEKIETSLNSDKPFTYNERIFGFPGRLLLPRGKKEGM 614
Query: 535 PFQLFVFVYPY--EPTPKESEPFKSVVPDNKPFGYPFDR 645
PFQLF++V P E S + D + FG+P D+
Sbjct: 615 PFQLFLYVSPVSSEYNQYNSRIWGGYKFDKRSFGFPLDK 653
>EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein.
Length = 684
Score = 136 bits (329), Expect = 2e-34
Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 5/219 (2%)
Frame = +1
Query: 4 YQVPYTQEALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSKEELKSSPHGYKVRQPR 183
+Q PY ++ + + LKI VDK++T+F+ FD N + ++ P K+RQ R
Sbjct: 435 HQKPYNKDEIIYPNLKIESFTVDKLITYFEQFDTTINNGLLLEEQRNDDKPFLIKIRQYR 494
Query: 184 LNHKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQ 363
LNHKPF I I +D A +++F+GPKYD + + ++ FYE+D ++ +N G
Sbjct: 495 LNHKPFNFHITINADKPMKAAIRIFIGPKYDSHHKLIEIPEDLKYFYEIDNWMLDLNSGL 554
Query: 364 SQITRSSTDFAFFKEDSLPMAEIYKLLDQGKIPTDMFNSSDTM---PSRLMLPKGTYDGF 534
++ITR+S D F D P Y+ ++ F ++ + P RL+LP+G +G
Sbjct: 555 NKITRNSLDCFFTMNDLEPSEIFYEKIETSLNSDKPFTYNERIFGFPGRLLLPRGKKEGM 614
Query: 535 PFQLFVFVYPY--EPTPKESEPFKSVVPDNKPFGYPFDR 645
PFQLF++V P E S + D + FG+P D+
Sbjct: 615 PFQLFLYVSPVSSEYNQYNSRIWGGYKFDKRSFGFPLDK 653
>AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein.
Length = 226
Score = 109 bits (261), Expect = 3e-26
Identities = 57/135 (42%), Positives = 77/135 (57%)
Frame = +1
Query: 16 YTQEALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSKEELKSSPHGYKVRQPRLNHK 195
YT E L+F G+ I V VDK++T+FDHF+ N V + K+ K RQ RLNHK
Sbjct: 64 YTTEELNFPGVSIESVTVDKLITYFDHFESMLNNGVSI-QSHAKAKNTMIKARQYRLNHK 122
Query: 196 PFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQIT 375
PFT I + SD +V++FLGPKYDE G L N+MNF ++D FV + G + I
Sbjct: 123 PFTYHIVVNSDKNVKGMVRIFLGPKYDEFGHEVDLVHNYMNFMQMDEFVVNLKSGSNTIE 182
Query: 376 RSSTDFAFFKEDSLP 420
R+S + F +P
Sbjct: 183 RNSHESXFVVPTRVP 197
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 103 bits (248), Expect = 1e-24
Identities = 67/221 (30%), Positives = 111/221 (50%), Gaps = 8/221 (3%)
Frame = +1
Query: 7 QVPYTQEALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSKEELKSSPH-GYKVRQPR 183
Q Y+Q L G+K V +DK+ T+FD D N V + E K + K R+
Sbjct: 438 QPQYSQSELQMPGVKFESVNIDKLYTYFDKCDTLINNAV--AVENFKGGMYLRLKARRAC 495
Query: 184 LNHKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPF-SLEDNWMNFYELDWFVQKVNPG 360
+N++ FT I+I SD T ++++FLGP +DE L+ + F E+D F + PG
Sbjct: 496 MNYERFTYKININSDKETKGMMRIFLGPAFDEIKHDMVYLQKYFYLFMEMDRFAVTLRPG 555
Query: 361 QSQITRSSTDFAFFKEDSLPMAEIYKLLDQGKIPTDMFNSSDTM---PSRLMLPKGTYDG 531
+ I R S++ F +P Y L++ ++ F S+ M P RL+LP+G +G
Sbjct: 556 SNSIERQSSESPFTTSTIMPSDIFYDKLNKAIGGSEPFTYSEKMLGFPERLILPRGKPEG 615
Query: 532 FPFQLFVFVYPYEPTPKESEP---FKSVVPDNKPFGYPFDR 645
+++F F+ + + +S + + D+K FG+P DR
Sbjct: 616 MRYKMFFFLSSMDESNTKSYEIPLYGKMTLDDKVFGFPLDR 656
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 103 bits (248), Expect = 1e-24
Identities = 67/221 (30%), Positives = 111/221 (50%), Gaps = 8/221 (3%)
Frame = +1
Query: 7 QVPYTQEALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSKEELKSSPH-GYKVRQPR 183
Q Y+Q L G+K V +DK+ T+FD D N V + E K + K R+
Sbjct: 438 QPQYSQSELQMPGVKFESVNIDKLYTYFDKCDTLINNAV--AVENFKGGMYLRLKARRAC 495
Query: 184 LNHKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPF-SLEDNWMNFYELDWFVQKVNPG 360
+N++ FT I+I SD T ++++FLGP +DE L+ + F E+D F + PG
Sbjct: 496 MNYERFTYKININSDKETKGMMRIFLGPAFDEIKHDMVYLQKYFYLFMEMDRFAVTLRPG 555
Query: 361 QSQITRSSTDFAFFKEDSLPMAEIYKLLDQGKIPTDMFNSSDTM---PSRLMLPKGTYDG 531
+ I R S++ F +P Y L++ ++ F S+ M P RL+LP+G +G
Sbjct: 556 SNSIERQSSESPFTTSTIMPSDIFYDKLNKAIGGSEPFTYSEKMLGFPERLILPRGKPEG 615
Query: 532 FPFQLFVFVYPYEPTPKESEP---FKSVVPDNKPFGYPFDR 645
+++F F+ + + +S + + D+K FG+P DR
Sbjct: 616 MRYKMFFFLSSMDESNTKSYEIPLYGKMTLDDKVFGFPLDR 656
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
protein.
Length = 1010
Score = 91.9 bits (218), Expect = 5e-21
Identities = 61/208 (29%), Positives = 101/208 (48%), Gaps = 8/208 (3%)
Frame = +1
Query: 16 YTQEALHFVGLKISDVKVDKMVTFFDHF--DFDAFNTVYFSKEELKSSPHGYKVRQPRLN 189
Y L G+ I +V V ++VT F F D DA +++ + + + RL+
Sbjct: 455 YQYNDLILPGVTIQNVDVSQLVTLFTDFYVDLDAVTGHQSQQQQEEQTQSRVRAHLKRLD 514
Query: 190 HKPFTVTIDIKSDV-ATNAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQS 366
H+P+ I + S+ AVV++FLGPK+D G P S+ N F ELD F+Q ++ G++
Sbjct: 515 HQPYQYKIAVHSEQNVPGAVVRVFLGPKHDHQGRPISISKNQHLFVELDQFIQNLHAGEN 574
Query: 367 QITRSSTDFAFFKEDSLPMAEIYKLLDQGKIPTDMFNSSD-----TMPSRLMLPKGTYDG 531
I R+S D ++I + ++ + F ++ + P+RL LPKG G
Sbjct: 575 TIIRNSQQAPGQSPDWPSTSQIQRGVNAAIRSQEPFYITEPHQIFSFPARLSLPKGQPQG 634
Query: 532 FPFQLFVFVYPYEPTPKESEPFKSVVPD 615
FP Q V + P + P+ V+P+
Sbjct: 635 FPLQFLVVISSSNPL---NVPYGPVIPE 659
Score = 22.2 bits (45), Expect = 4.4
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +1
Query: 613 DNKPFGYPFDR 645
D KP G+P DR
Sbjct: 969 DGKPLGFPLDR 979
>AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase protein.
Length = 693
Score = 83.8 bits (198), Expect = 1e-18
Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 21/231 (9%)
Frame = +1
Query: 16 YTQEALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSKEELKSSPHGYKV-RQPRLNH 192
YT + L F G++I+D+K+ F + V S+ L +P G + R LNH
Sbjct: 422 YTVQQLDFPGIEIADIKLTTNQQRNILNTFWTKSDVDLSRG-LDFTPRGAVLARFTHLNH 480
Query: 193 KPFTVTIDI--KSDVATNAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQS 366
F+ TI I +++ + V++F+GPK DE G PF+ + ELD F + PG++
Sbjct: 481 ADFSYTIVINNRNNTSMKGTVRIFIGPKEDERGLPFTFREQKNLMIELDKFPITLQPGKN 540
Query: 367 QITRSSTDFAFFKEDSLPMAEIYKLLDQGK-IPTDMFNSSDTM----PSRLMLPKGTYDG 531
I + ST + ++P ++ LD+ + I D D P +++PKG +G
Sbjct: 541 TIEQKSTKSSV----TIPFERTFRNLDENRPIGGDSLERFDFCGCGWPQHMLIPKGNKEG 596
Query: 532 FPFQLFVFVYPY-EPTPKESEPF------------KSVVPDNKPFGYPFDR 645
F +LFV V Y + +++EP PD + GYPFDR
Sbjct: 597 FAMELFVMVSDYKDDRVEQNEPIGCKDASSYCGLRDRKYPDARAMGYPFDR 647
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 25.8 bits (54), Expect = 0.36
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = -2
Query: 539 KGNPSYVPLGSISLEGIVSEEL 474
KG+ ++VPL ++S EG+ S++L
Sbjct: 587 KGDVAFVPLTALSEEGVQSKDL 608
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 25.8 bits (54), Expect = 0.36
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = -2
Query: 539 KGNPSYVPLGSISLEGIVSEEL 474
KG+ ++VPL ++S EG+ S++L
Sbjct: 587 KGDVAFVPLTALSEEGVQSKDL 608
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 25.8 bits (54), Expect = 0.36
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = -2
Query: 539 KGNPSYVPLGSISLEGIVSEEL 474
KG+ ++VPL ++S EG+ S++L
Sbjct: 587 KGDVAFVPLTALSEEGVQSKDL 608
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 25.0 bits (52), Expect = 0.63
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 289 PFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTDF 393
PF+ + +LD ++ + GQ+ + R+ST+F
Sbjct: 512 PFNASPTTWSPADLDRALEAIRSGQTSVQRASTEF 546
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 23.8 bits (49), Expect = 1.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 61 VKVDKMVTFFDHFDFDAFNTVYFS 132
+ +DK+ FF F F N VY+S
Sbjct: 357 IYIDKVSRFFFPFSFLILNVVYWS 380
>M29491-1|AAA27726.1| 79|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H17. ).
Length = 79
Score = 22.2 bits (45), Expect = 4.4
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -1
Query: 522 CTLRQHQPRR 493
CTLR+H+P R
Sbjct: 1 CTLRKHKPNR 10
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.4 bits (43), Expect = 7.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 454 FLGPRACRFRPSV 416
F+ P A RFRPS+
Sbjct: 156 FIPPNAYRFRPSL 168
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.4 bits (43), Expect = 7.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 454 FLGPRACRFRPSV 416
F+ P A RFRPS+
Sbjct: 156 FIPPNAYRFRPSL 168
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.4 bits (43), Expect = 7.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 454 FLGPRACRFRPSV 416
F+ P A RFRPS+
Sbjct: 156 FIPPNAYRFRPSL 168
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 7.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 454 FLGPRACRFRPSV 416
F+ P A RFRPS+
Sbjct: 387 FIPPNAYRFRPSL 399
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 7.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 454 FLGPRACRFRPSV 416
F+ P A RFRPS+
Sbjct: 387 FIPPNAYRFRPSL 399
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 7.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 454 FLGPRACRFRPSV 416
F+ P A RFRPS+
Sbjct: 387 FIPPNAYRFRPSL 399
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 7.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 454 FLGPRACRFRPSV 416
F+ P A RFRPS+
Sbjct: 387 FIPPNAYRFRPSL 399
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 7.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 454 FLGPRACRFRPSV 416
F+ P A RFRPS+
Sbjct: 376 FIPPNAYRFRPSL 388
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.4 bits (43), Expect = 7.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 454 FLGPRACRFRPSV 416
F+ P A RFRPS+
Sbjct: 389 FIPPNAYRFRPSL 401
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,686
Number of Sequences: 438
Number of extensions: 3417
Number of successful extensions: 48
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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