Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13i11f
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.6  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   5.6  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   7.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   7.4  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   9.8  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 62  VFLRTKTQRKPYSLNVLN 9
           +FL TK+ R P +L V+N
Sbjct: 76  IFLSTKSLRTPSNLFVIN 93


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
          rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 62 VFLRTKTQRKPYSLNVLN 9
          +FL TK+ R P +L V+N
Sbjct: 42 IFLSTKSLRTPSNLFVIN 59


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 414 FQPVLNLYHSDFKYHTQH 467
           F P++  YH  FK   +H
Sbjct: 65  FDPIIEDYHGGFKKTDKH 82


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 548 ELGTIFEVVAPFDLNLANDTVKQPV 622
           E+G  F+      +N++ D V QP+
Sbjct: 171 EIGINFDKYDNIQVNVSGDNVPQPI 195


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 414 FQPVLNLYHSDFKYHTQH 467
           F P++  YH  FK   +H
Sbjct: 81  FDPIIEDYHGGFKKTDKH 98


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 476 VAGERGNINYKITARLIQA 532
           V  E GN N K T  ++QA
Sbjct: 72  VVDENGNFNEKNTRDIVQA 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,244
Number of Sequences: 438
Number of extensions: 3560
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)