Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13i07f
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    27   2.6  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   3.5  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    25   6.1  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   6.1  

>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 399 FFILSTDYDEYAIAYTCKTLKKKTRTHYVFTW 494
           FF+ STD  +Y   Y  +   KK   H+   W
Sbjct: 111 FFVTSTDVFKYLDEYERRVRSKKALGHFPVVW 142


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 139 WIILSFQGYGTTLQAMQAMDGQS 207
           W+   F+ YGT + A   MDGQS
Sbjct: 278 WLGQEFEEYGTIVGARVIMDGQS 300


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 222 GWHNRRLAVHRLHSLQRCTIPLK-T*YNPSSLAASY 118
           GWH RR  V ++     C++  K   Y  S++A ++
Sbjct: 146 GWHYRRYVVSQIERAGNCSLAKKEMEYTTSAIATNF 181


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 389 QNFITALVADNELSLVSSIKRGVDSCQVRLLGSITPVDIHVR 264
           +N++TA       ++++ I+ GV  CQ ++   +TP D   R
Sbjct: 266 ENYVTAY------NMLTGIRVGVSRCQAKMDRELTPADFTAR 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,311
Number of Sequences: 5004
Number of extensions: 55961
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)