Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13i06r
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   7.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   7.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   7.2  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 380 IIMSCLTVETFVAICRPDVS 321
           + ++  TVE ++AIC P +S
Sbjct: 143 LTITAFTVERYIAICHPFIS 162


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 468 INWLFLVIN*YYDFSNVF 415
           ++++FL+ N + DFS  F
Sbjct: 179 LDYIFLIFNQFQDFSESF 196


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 468 INWLFLVIN*YYDFSNVF 415
           ++++FL+ N + DFS  F
Sbjct: 179 LDYIFLIFNQFQDFSESF 196


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 468 INWLFLVIN*YYDFSNVF 415
           ++++FL+ N + DFS  F
Sbjct: 179 LDYIFLIFNQFQDFSESF 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,020
Number of Sequences: 438
Number of extensions: 3612
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)