Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13i06f
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr 2||...    28   0.96 
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   3.9  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   3.9  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   6.8  
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.0  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   9.0  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.0  

>SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 85

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 519 ESYKRKVVEEIEEMLAKYKLTDAYEELDKIIDLKHS 626
           E  K ++   +++ LAK K  DA + + K IDL H+
Sbjct: 14  EQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHT 49


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -2

Query: 396 FVSYYSHKPKQFLCRDMFRVRVDSLSPISLDIRPCSLPIKLLFPSTGPALWTISEIF 226
           F+  Y  + K  L      +R+ SLS      R  ++ ++  FPS    LW IS ++
Sbjct: 68  FLQTYGKQEKNLLAYFKASIRIKSLS----HQRKAAVELQKNFPSRKHTLWVISSLY 120


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 521 LGSVMNIIIKGEVIFFKILFILH 453
           LG ++N ++KG +  + +L I+H
Sbjct: 162 LGKIINSMVKGLIYLYNVLHIIH 184


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 450  NVKYEKDFKKNDLTFNYYIHNTTESYKRKVVEEIEEMLAKYKLTDAY-EELDKIIDL 617
            +++ E D+K+  L     +  T E Y+++++   +      KL + Y + L+++ DL
Sbjct: 1037 HLEKENDYKQQLLLVTEDLRKTREDYEKELLRHADARSTLQKLREDYTKALEQVEDL 1093


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 500 IIKGEVIFFKILFILHVYITVRECGIDKRLRSSYGSFR 387
           I+ GE +F  IL I H Y  V +  I   +  +  S+R
Sbjct: 432 IVIGEAVFVAILMIKHGYANVAQTIIASPVYEALKSYR 469


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 267 EKGALLEGYMGEYLTKWVIENQL 335
           +K ALL G     L KW+++ QL
Sbjct: 357 QKAALLLGVDSSTLAKWIVKRQL 379


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 318 VIENQLLPGTCPDKETVLVYANNTKRTIAT 407
           V++++L+  T PD    +  ANN K  I +
Sbjct: 323 VLDSELMEQTLPDSAEAVEIANNVKEDIVS 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,536
Number of Sequences: 5004
Number of extensions: 57418
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)