Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13i06f
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0736 + 22650641-22650689,22650827-22650975,22651783-226518...    30   1.3  
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241     29   3.0  
06_03_1024 - 26958473-26958661,26958750-26958815,26959234-269593...    28   5.3  
12_02_0226 + 15887835-15891188                                         28   7.0  

>12_02_0736 +
           22650641-22650689,22650827-22650975,22651783-22651839,
           22653534-22653611,22654688-22654953,22655249-22655351
          Length = 233

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 240 ISEIFCSCIHLCGLKMKPLCCDD*KLILARGVDSQRRIIIKNK 112
           I E+F SC H   LK+ P+C D   + L   + S+     K K
Sbjct: 71  IHEVFLSCFHYRVLKVCPICYDAVGMDLVSHITSEHPSFFKGK 113


>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
          Length = 1445

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
 Frame = +3

Query: 240  WSKEPGLLTE----KGALLEGYMGEYLTKWVIENQLLPGTCPDKE--TVLVYANNTKRTI 401
            W   PG++T+    +    E +M   L   +  N++  G  PD     V+ +A  T +T 
Sbjct: 846  WDLIPGVITDMYQHQREAFE-FMWTNLVGDIRLNEIKHGAKPDVVGGCVICHAPGTGKT- 903

Query: 402  ATAKAFVDA---AFPDCNINV--------KYEKDFKKNDLTFNYYIHNTTESYKRKVVEE 548
              A  F+      FPDC   +         +E++FKK ++   ++I NTT+ Y  K   +
Sbjct: 904  RLAIVFIQTYMKVFPDCRPVIIAPRGMLFAWEQEFKKWNVNVPFHIMNTTD-YSGKEDRD 962

Query: 549  IEEMLAKYKLTDAYEELDKI 608
            I  ++ K   T+    L K+
Sbjct: 963  ICRLIKKEHRTEKLTRLVKL 982


>06_03_1024 -
           26958473-26958661,26958750-26958815,26959234-26959303,
           26959526-26959773,26959938-26960029,26960726-26960871,
           26961001-26961185,26961721-26961838,26961948-26962087
          Length = 417

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 186 RVSFSNRIDEYTNKIFPKWSKEPGLLTEKGALLEGYMGEYL 308
           RV+F   +  Y    F  W K+PGL T +G L+E ++G+++
Sbjct: 120 RVTFKIVLS-YHGGSFDGWQKQPGLNTVQG-LVEKHLGQFV 158


>12_02_0226 + 15887835-15891188
          Length = 1117

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 462 EKDFKKNDLTFNYYIHNTTESYKRKVVEEIEEMLAKYKLTDAYEELDK 605
           E DF+ ++ TF+  I    +++  +    IE M A +      EEL +
Sbjct: 583 ESDFRPSEQTFSRIISTLYDNHYLEEASNIERMRASFNCCSPIEELQR 630


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,911,977
Number of Sequences: 37544
Number of extensions: 329324
Number of successful extensions: 771
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)