Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13h21f
         (567 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D66904-1|BAA11029.1|  360|Homo sapiens suppressor for yeast muta...    32   1.6  
BC126106-1|AAI26107.1|  542|Homo sapiens polymerase (DNA directe...    29   8.6  
BC117137-1|AAI17138.1|  542|Homo sapiens polymerase (DNA directe...    29   8.6  
BC084567-1|AAH84567.2|  542|Homo sapiens polymerase (DNA directe...    29   8.6  
AY623114-1|AAT38110.1|  542|Homo sapiens polymerase (DNA directe...    29   8.6  
AF089896-1|AAD45198.1|  517|Homo sapiens topoisomerase-related f...    29   8.6  
AB005754-1|BAA24434.2|  542|Homo sapiens LAK-1 protein.                29   8.6  

>D66904-1|BAA11029.1|  360|Homo sapiens suppressor for yeast mutant
           protein.
          Length = 360

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 207 SAAPVGSVVPNLVAPCGTPCIYPGQSIAP 293
           S++  G    +  +PC TPC  PG S+AP
Sbjct: 148 SSSASGWATASSTSPCSTPCSMPGTSVAP 176


>BC126106-1|AAI26107.1|  542|Homo sapiens polymerase (DNA directed)
           sigma protein.
          Length = 542

 Score = 29.5 bits (63), Expect = 8.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 153 LQYGAPSIAVAGSQLAQISAAPVGSVVPNLVAPCGTPCIYPGQSIAPA 296
           L   +P +  +GS  + +S+   GS V +   PC TP +Y     APA
Sbjct: 345 LSLSSPQLLSSGSSASSVSSLS-GSDVDSDTPPCTTPSVYQFSLQAPA 391


>BC117137-1|AAI17138.1|  542|Homo sapiens polymerase (DNA directed)
           sigma protein.
          Length = 542

 Score = 29.5 bits (63), Expect = 8.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 153 LQYGAPSIAVAGSQLAQISAAPVGSVVPNLVAPCGTPCIYPGQSIAPA 296
           L   +P +  +GS  + +S+   GS V +   PC TP +Y     APA
Sbjct: 345 LSLSSPQLLSSGSSASSVSSLS-GSDVDSDTPPCTTPSVYQFSLQAPA 391


>BC084567-1|AAH84567.2|  542|Homo sapiens polymerase (DNA directed)
           sigma protein.
          Length = 542

 Score = 29.5 bits (63), Expect = 8.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 153 LQYGAPSIAVAGSQLAQISAAPVGSVVPNLVAPCGTPCIYPGQSIAPA 296
           L   +P +  +GS  + +S+   GS V +   PC TP +Y     APA
Sbjct: 345 LSLSSPQLLSSGSSASSVSSLS-GSDVDSDTPPCTTPSVYQFSLQAPA 391


>AY623114-1|AAT38110.1|  542|Homo sapiens polymerase (DNA directed)
           sigma protein.
          Length = 542

 Score = 29.5 bits (63), Expect = 8.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 153 LQYGAPSIAVAGSQLAQISAAPVGSVVPNLVAPCGTPCIYPGQSIAPA 296
           L   +P +  +GS  + +S+   GS V +   PC TP +Y     APA
Sbjct: 345 LSLSSPQLLSSGSSASSVSSLS-GSDVDSDTPPCTTPSVYQFSLQAPA 391


>AF089896-1|AAD45198.1|  517|Homo sapiens topoisomerase-related
           function protein protein.
          Length = 517

 Score = 29.5 bits (63), Expect = 8.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 153 LQYGAPSIAVAGSQLAQISAAPVGSVVPNLVAPCGTPCIYPGQSIAPA 296
           L   +P +  +GS  + +S+   GS V +   PC TP +Y     APA
Sbjct: 385 LSLSSPQLLSSGSSASSVSSLS-GSDVDSDTPPCTTPSVYQFSLQAPA 431


>AB005754-1|BAA24434.2|  542|Homo sapiens LAK-1 protein.
          Length = 542

 Score = 29.5 bits (63), Expect = 8.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 153 LQYGAPSIAVAGSQLAQISAAPVGSVVPNLVAPCGTPCIYPGQSIAPA 296
           L   +P +  +GS  + +S+   GS V +   PC TP +Y     APA
Sbjct: 345 LSLSSPQLLSSGSSASSVSSLS-GSDVDSDTPPCTTPSVYQFSLQAPA 391


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,280,835
Number of Sequences: 237096
Number of extensions: 1462023
Number of successful extensions: 2737
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2737
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)