Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13h20f
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 27 1.8
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 27 2.4
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 27 3.2
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 27 3.2
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 4.2
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 26 5.6
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 25 7.4
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 25 7.4
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.4
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 25 9.7
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 27.5 bits (58), Expect = 1.8
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Frame = -1
Query: 431 ENNWNQTRQTH-VGQAFRTFYVSEALQFFL-LIRKRKLHIIGSSLAMSVHKINHQQFHVI 258
E +W+ R + + T + AL LI ++ H+I ++ + Q H+
Sbjct: 269 ERSWSVERVIECIRYSILTHFYGNALSIIEHLIYQKDFHLISPLHLTTLRTVPSFQRHIE 328
Query: 257 VRLPVGDVAGGCVHLHQQIDEY*IFQHFIRAACERRHCRYGLRR 126
RL +GD+ ++ + +++ FQ + CE R L R
Sbjct: 329 QRLEIGDLE-SINYVEKMLNDDTYFQEMVIQMCENLLYRERLLR 371
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -3
Query: 411 ATNSRWSSLQDLLRE*GSSVLPADQKEKAPHHRELSRHVCSQNKPSTVPCHRSP--PGW 241
A +S + S LL S L A +K P+ +L ++ +KP TVP P P W
Sbjct: 110 AFDSEFDSNLKLLDSELKSWLKAQKKRSVPNGTQLVKNYNKISKPETVPPDDDPEKPDW 168
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -3
Query: 354 VLPADQKEKA-PHHRELSRHVCSQNKPSTVPC 262
V P DQ K H L+RH +K +PC
Sbjct: 30 VFPCDQCAKRFTRHENLTRHKACHSKAEPIPC 61
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +3
Query: 258 DDMELLMVYFVNRHGERAPDDVELSLSDQQEELKSLTHV 374
D++ELL+ F+ R+G+R V+ S S E L + +H+
Sbjct: 126 DEIELLLEIFIERYGKRWL-SVDYSASQYMELLYTKSHL 163
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 324 PHHRELSRHVCSQNKPSTVPCHRSPPGW 241
P +S H P+TVP H +PPG+
Sbjct: 315 PFSPNVSSHPHMAFLPATVPTHSAPPGF 342
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 318 DVELSLSDQQEELKSLTHVEGPEGLTNVSLSRLIPVV 428
+V + DQ+ KSL ++E PE + L+P++
Sbjct: 154 NVVCPIYDQETVEKSLNNIESPESFSYEDAFTLLPII 190
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +1
Query: 511 VLALRTLKTLH--KHFKTPNLLLPLRFRWSVRCFASS--NSDY*LTSCY 645
++ + L+ +H KH K+P++ L + S+RC +D+ L++ Y
Sbjct: 219 IVLAKILQAIHEKKHLKSPDITLEIAILKSMRCIIGQKIGTDFYLSNKY 267
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 472 EPQRVTLLLLYVIWKTTGIKRDKLTLVKPSGPST 371
E ++ LLLLY+I++ I +D L + S ST
Sbjct: 403 ESTKIRLLLLYIIYRDGIILQDLFRLFRHSNLST 436
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 7.4
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = +3
Query: 183 KYLIFVYLLMQVNTSPGNVTNREANDDMELLMVYFVNRHGERAPDDVELSLSDQQEELKS 362
K LI L Q + EA D ++L HGE D+V L++ E+
Sbjct: 107 KILIETLDLHQKEGFEETIVTEEATDAVDLEAKG--TTHGENDLDEVPTELNELANEVVD 164
Query: 363 LTHVEGPEGLTNV-SLSRLIPV 425
+ V P N S++ ++P+
Sbjct: 165 VDDVVSPSSELNAQSVNNILPI 186
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3
Query: 279 PSTVPCHRSPPGW 241
PS +P HR P GW
Sbjct: 1206 PSIIPDHRPPEGW 1218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,047
Number of Sequences: 5004
Number of extensions: 45793
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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