Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13h14f
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 27 1.6
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.6
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 27 1.6
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 27 2.8
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 26 3.7
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 3.7
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 4.9
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 26 4.9
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 8.6
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 25 8.6
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 8.6
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 25 8.6
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/53 (20%), Positives = 25/53 (47%)
Frame = +1
Query: 430 DDSDFENDNYKLDNTKVTLKMVSEWQAELQSEGKIKLSTLITVIKAFNAAMLR 588
D S +D++K+D++ + + W+ K + + K +N A+L+
Sbjct: 319 DQSRVSSDSFKVDDSSAKMAAIDIWEGSQHIVSNDKALSWLVTDKPYNKAVLK 371
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -1
Query: 307 LQENYRSLDLSSSIFPK--IFYDSQDLALHQSLMN 209
L+EN ++LSSSI P + DSQ L+Q+L N
Sbjct: 6 LKENTEIINLSSSIHPNRDSYLDSQSDPLNQNLYN 40
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -1
Query: 454 CHSRSHCHHYQPARLLVCVFSHHLHYCHSVCQIPDHH--WL 338
CH+ CH Y+P R + H H C + + DHH WL
Sbjct: 184 CHT---CHLYRPPR------ASHCHLCDNCVEYLDHHCIWL 215
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 289 SLDLSSSIFPKIFYDSQDLALHQSLMNPAPALIG 188
+L S ++PK+F D +L +S + A AL G
Sbjct: 67 ALQTFSQVYPKLFIGENDRSLVESWVETASALAG 100
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +1
Query: 448 NDNYKLDNTKVTLKMVSEWQAELQSEGKIKLSTLITVIKAFNAAM 582
NDN + +T+ K +E E Q++G KLS++ IK+F A +
Sbjct: 19 NDNKGIPSTEFVEKF-AESLYETQNDGSKKLSSIDGSIKSFAACL 62
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 430 DDSDFENDNYKLDNTKVTLKMVSEWQAELQSEGKIKLSTLITVIKAFN 573
D FE L+N +K S + EL+ L TLI++ F+
Sbjct: 519 DTESFEKQRVALENASKLIKRKSAFGTELRDHADELLQTLISLQNRFD 566
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +1
Query: 421 ADSDDSDFENDNYKLDNTKVTLKMVSEWQAELQSEGKIKLST 546
+DSD D EN + KLDN + + +++ + + +++ + LS+
Sbjct: 211 SDSDHDDGENSDSKLDNLRNYIVSLNQKRKKDEADAESVLSS 252
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/56 (25%), Positives = 22/56 (39%)
Frame = +1
Query: 424 DSDDSDFENDNYKLDNTKVTLKMVSEWQAELQSEGKIKLSTLITVIKAFNAAMLRV 591
+ DDSD N + K+T S W G K S L + + N ++ +
Sbjct: 401 EEDDSDEFNPSVSRKKAKLTSSQFSNWMLVTGVTGIGKTSCLYAICRELNFEVVEI 456
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.0 bits (52), Expect = 8.6
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -1
Query: 178 VQLLFSL*IKKYSEHCLHVGP-LKYYLSYRYVK*VLIY*WFVYFFFSLTAYC 26
V++ FSL ++S L+ G L Y L + + L + ++YF+ +LTA C
Sbjct: 1312 VRVPFSLLYSRFSGPSLYFGSRLMYMLLFGSITAWLPH--YIYFWITLTALC 1361
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = -2
Query: 405 CVYFLIIFITVTLSVRFLIITGCFKVQQILVILFKKIIEV 286
C+ +IF+ + V + + C KV + + K+I V
Sbjct: 150 CIKVTVIFLAQCVKVTVIFLAQCVKVTAVFLAKCVKVIAV 189
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 41 AEKKIDKPSINQYLFDIPVT*IVF 112
AEK++D SIN L +PV +F
Sbjct: 999 AEKRLDSFSINDILSQVPVFEFIF 1022
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -1
Query: 397 FSHHLHYCHSVCQIPDHHWLLQSSANSRHSLQENYRSLDLSSSIFPKIFYDSQD 236
F+HH + +C I + + S+ S + + +SL ++S F I D+QD
Sbjct: 350 FTHHADWWDVLCDIDNQTIQVSSNLFSDATTTMDTKSLFNNTSPFTPISKDNQD 403
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,436
Number of Sequences: 5004
Number of extensions: 42363
Number of successful extensions: 147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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