Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner13h12f
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo... 81 1e-16
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar... 31 0.19
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 31 0.19
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 31 0.19
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 29 0.43
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 27 1.8
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 27 2.3
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 4.0
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 26 4.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 4.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 4.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 4.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 4.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 4.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 4.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 4.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 4.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 4.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 4.0
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac... 26 5.3
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 26 5.3
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 26 5.3
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 7.1
SPAC1399.04c |||uracil phosphoribosyltransferase |Schizosaccharo... 25 7.1
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 25 9.3
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 9.3
>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 81.0 bits (191), Expect = 1e-16
Identities = 37/105 (35%), Positives = 62/105 (59%)
Frame = +3
Query: 246 DEENIRAKEQGILNXXXXXXXXXXXXXXXXXXXXTRPFLSLISKAKAAKLVRSLVDFFLD 425
DE+ +EQ + N +RP ++ SKAK+AK+VR+L+D F
Sbjct: 37 DEKVANEQEQALTNLSDLYVRENRHNDLAQLVQQSRPLMANFSKAKSAKIVRTLIDKFSG 96
Query: 426 LEAGIGIEVQLCKECIEWAKEERRTFLRQSLEARLIALYFDTGMY 560
+ + +++++ +CI+WA +E+RTFLRQ+LE +LI+LY+D Y
Sbjct: 97 EKKSLPLQIEVANDCIKWAIKEKRTFLRQALETKLISLYYDNSSY 141
>SPAC977.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 30.7 bits (66), Expect = 0.19
Identities = 23/75 (30%), Positives = 37/75 (49%)
Frame = -3
Query: 599 LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYALFTQLYFYTDPCLQI* 420
L +K +++V ++S+ +Q+ CF R+P L Y L +L Y C I
Sbjct: 3 LLKKINTQVNRIMKNSSL-VQN--ICFDRVPLFIPRLSLTVKYCLAVKLLIYLLYCWYIY 59
Query: 419 EEVNKGTYQFRSFSF 375
EV + +FRSF+F
Sbjct: 60 SEVPSASSKFRSFTF 74
>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 30.7 bits (66), Expect = 0.19
Identities = 23/75 (30%), Positives = 37/75 (49%)
Frame = -3
Query: 599 LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYALFTQLYFYTDPCLQI* 420
L +K +++V ++S+ +Q+ CF R+P L Y L +L Y C I
Sbjct: 3 LLKKINTQVNRIMKNSSL-VQN--ICFDRVPLFIPRLSLTVKYCLAVKLLIYLLYCWYIY 59
Query: 419 EEVNKGTYQFRSFSF 375
EV + +FRSF+F
Sbjct: 60 SEVPSASSKFRSFTF 74
>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 30.7 bits (66), Expect = 0.19
Identities = 23/75 (30%), Positives = 37/75 (49%)
Frame = -3
Query: 599 LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYALFTQLYFYTDPCLQI* 420
L +K +++V ++S+ +Q+ CF R+P L Y L +L Y C I
Sbjct: 3 LLKKINTQVNRIMKNSSL-VQN--ICFDRVPLFIPRLSLTVKYCLAVKLLIYLLYCWYIY 59
Query: 419 EEVNKGTYQFRSFSF 375
EV + +FRSF+F
Sbjct: 60 SEVPSASSKFRSFTF 74
>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 29.5 bits (63), Expect = 0.43
Identities = 23/75 (30%), Positives = 37/75 (49%)
Frame = -3
Query: 599 LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYALFTQLYFYTDPCLQI* 420
L +K +++V ++S+ +Q+ CF R+P L Y L +L Y C I
Sbjct: 3 LLKKINTQVNRIMKNSSL-VQN--ICFDRVPLFIPRLSLTVKYCLAVKLLIYLLYCWYIY 59
Query: 419 EEVNKGTYQFRSFSF 375
EV + +FRSF+F
Sbjct: 60 SEVPSVSSKFRSFTF 74
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 262 LMFXXXXXXXSPVLTILSVMRTSSSLFVDDETRDL 158
L+F P LTI +++ T S DDE R++
Sbjct: 1038 LVFGSIFGYLEPALTITAILSTKSPFLGDDEAREI 1072
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 229 PVLTILSVMRTSSSLFVDDETRD 161
P+ T+L RT + LF+DD TR+
Sbjct: 172 PMPTLLPYERTVNGLFIDDTTRE 194
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -3
Query: 644 KKHFNQ*VXVIKFF*LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYAL 465
K+H N IK F +++ F+ V ++ K+ F K A F GPFY L
Sbjct: 1168 KEHLN--TNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL 1225
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 419 EEVNKGTYQFRSFSFTYEAQKWS 351
E + KG+Y F FS T +KW+
Sbjct: 75 ESLAKGSYSFTGFSITDLQEKWN 97
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -3
Query: 644 KKHFNQ*VXVIKFF*LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYAL 465
K+H N IK F +++ F+ V ++ K+ F K A F GPFY L
Sbjct: 1168 KEHLN--TNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL 1225
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -3
Query: 644 KKHFNQ*VXVIKFF*LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYAL 465
K+H N IK F +++ F+ V ++ K+ F K A F GPFY L
Sbjct: 1168 KEHLN--TNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL 1225
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -3
Query: 644 KKHFNQ*VXVIKFF*LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYAL 465
K+H N IK F +++ F+ V ++ K+ F K A F GPFY L
Sbjct: 1168 KEHLN--TNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL 1225
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -3
Query: 644 KKHFNQ*VXVIKFF*LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYAL 465
K+H N IK F +++ F+ V ++ K+ F K A F GPFY L
Sbjct: 1168 KEHLN--TNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL 1225
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -3
Query: 644 KKHFNQ*VXVIKFF*LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYAL 465
K+H N IK F +++ F+ V ++ K+ F K A F GPFY L
Sbjct: 1168 KEHLN--TNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL 1225
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -3
Query: 644 KKHFNQ*VXVIKFF*LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYAL 465
K+H N IK F +++ F+ V ++ K+ F K A F GPFY L
Sbjct: 1168 KEHLN--TNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL 1225
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -3
Query: 644 KKHFNQ*VXVIKFF*LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYAL 465
K+H N IK F +++ F+ V ++ K+ F K A F GPFY L
Sbjct: 1168 KEHLN--TNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL 1225
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -3
Query: 644 KKHFNQ*VXVIKFF*LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYAL 465
K+H N IK F +++ F+ V ++ K+ F K A F GPFY L
Sbjct: 1168 KEHLN--TNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL 1225
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -3
Query: 644 KKHFNQ*VXVIKFF*LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYAL 465
K+H N IK F +++ F+ V ++ K+ F K A F GPFY L
Sbjct: 1168 KEHLN--TNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL 1225
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -3
Query: 644 KKHFNQ*VXVIKFF*LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYAL 465
K+H N IK F +++ F+ V ++ K+ F K A F GPFY L
Sbjct: 1168 KEHLN--TNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL 1225
>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 5.3
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +3
Query: 120 INIHSMAGAMLFERSRVSSSTNRDEDVRM-TDKMVSTGE----LPEDDEENIRAKEQGIL 284
+N+ S+ + V SS +D+ + T + TG LPED E+I + QGI+
Sbjct: 290 VNLESITVTNSTSSNNVQSSKRSSKDIEVNTTVTLDTGTVYIYLPEDTVESIADQYQGIV 349
Query: 285 N 287
+
Sbjct: 350 S 350
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 79 TILLFIEYFYSVSV*IYTVWPER 147
+I L+I+Y YS +V YT W ++
Sbjct: 310 SIRLWIDYLYSTAVDFYTNWIQK 332
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +3
Query: 120 INIHSMAGAMLFERSRVSSSTNRDEDVRMTDKMVSTGELPEDDEENIR 263
+N + M+G FE ++ S +TN ++ +T ++ ++D +N R
Sbjct: 619 LNSNGMSGTEGFENTQTSITTNDNQSSILTSSDQTSPFATDEDRQNSR 666
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 177 STNRDEDVRMTDKMVSTGELPEDDEENIRAKEQGILN 287
S + D + R D G+L +EE+I+ E +LN
Sbjct: 404 SPHNDAETRADDDAYLMGDLFNQEEEDIQDTENDLLN 440
>SPAC1399.04c |||uracil phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 220
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 522 LPKTAEERCVVLPWPILCTLYTTVLLYRSL 433
LPK A++R V+L P+L T + +L ++L
Sbjct: 127 LPKDAQDRLVLLLDPLLATGNSVILAIQTL 156
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 384 AAKLVRSLVDFFLDLEAGIGIEVQLCK 464
A K VRS+V + +D AG+ + +CK
Sbjct: 355 AIKNVRSMVIWLVDTPAGLKLNNDICK 381
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 162 SRVSSSTNRDEDVRMTDKMVSTGELPEDDEEN 257
S+V +S N+DE+ + D + S +++EEN
Sbjct: 74 SQVQNSPNKDEEHQTADLLASNEGNEKNNEEN 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,075
Number of Sequences: 5004
Number of extensions: 55019
Number of successful extensions: 183
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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