Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner13h12f
         (646 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC004430-1|AAH04430.1|  422|Homo sapiens proteasome (prosome, ma...   135   1e-31
BC000437-1|AAH00437.1|  422|Homo sapiens proteasome (prosome, ma...   135   1e-31
AK223196-1|BAD96916.1|  423|Homo sapiens proteasome 26S non-ATPa...   135   1e-31
AB003102-1|BAA19748.1|  422|Homo sapiens 26S proteasome subunit ...   135   1e-31
AF001212-1|AAB58732.1|  422|Homo sapiens 26S proteasome subunit ...   131   2e-30
BC025249-1|AAH25249.1|  574|Homo sapiens zinc finger and BTB dom...    30   8.1  
AK027045-1|BAB15636.1|  574|Homo sapiens protein ( Homo sapiens ...    30   8.1  

>BC004430-1|AAH04430.1|  422|Homo sapiens proteasome (prosome,
           macropain) 26S subunit, non-ATPase, 11 protein.
          Length = 422

 Score =  135 bits (326), Expect = 1e-31
 Identities = 68/141 (48%), Positives = 91/141 (64%)
 Frame = +3

Query: 138 AGAMLFERSRVSSSTNRDEDVRMTDKMVSTGELPEDDEENIRAKEQGILNXXXXXXXXXX 317
           A  + F+R++   ST+R+  + +   +V   ++ E+DEE ++ KEQ IL           
Sbjct: 4   AAVVEFQRAQSLLSTDREASIDILHSIVKR-DIQENDEEAVQVKEQSILELGSLLAKTGQ 62

Query: 318 XXXXXXXXXXTRPFLSLISKAKAAKLVRSLVDFFLDLEAGIGIEVQLCKECIEWAKEERR 497
                      RPFL+ ISKAKAA+LVRSL+D FLD+EA  G EV+LC ECIEWAK E+R
Sbjct: 63  AAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKR 122

Query: 498 TFLRQSLEARLIALYFDTGMY 560
           TFLRQ+LEARL++LYFDT  Y
Sbjct: 123 TFLRQALEARLVSLYFDTKRY 143


>BC000437-1|AAH00437.1|  422|Homo sapiens proteasome (prosome,
           macropain) 26S subunit, non-ATPase, 11 protein.
          Length = 422

 Score =  135 bits (326), Expect = 1e-31
 Identities = 68/141 (48%), Positives = 91/141 (64%)
 Frame = +3

Query: 138 AGAMLFERSRVSSSTNRDEDVRMTDKMVSTGELPEDDEENIRAKEQGILNXXXXXXXXXX 317
           A  + F+R++   ST+R+  + +   +V   ++ E+DEE ++ KEQ IL           
Sbjct: 4   AAVVEFQRAQSLLSTDREASIDILHSIVKR-DIQENDEEAVQVKEQSILELGSLLAKTGQ 62

Query: 318 XXXXXXXXXXTRPFLSLISKAKAAKLVRSLVDFFLDLEAGIGIEVQLCKECIEWAKEERR 497
                      RPFL+ ISKAKAA+LVRSL+D FLD+EA  G EV+LC ECIEWAK E+R
Sbjct: 63  AAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKR 122

Query: 498 TFLRQSLEARLIALYFDTGMY 560
           TFLRQ+LEARL++LYFDT  Y
Sbjct: 123 TFLRQALEARLVSLYFDTKRY 143


>AK223196-1|BAD96916.1|  423|Homo sapiens proteasome 26S non-ATPase
           subunit 11 variant protein.
          Length = 423

 Score =  135 bits (326), Expect = 1e-31
 Identities = 68/141 (48%), Positives = 91/141 (64%)
 Frame = +3

Query: 138 AGAMLFERSRVSSSTNRDEDVRMTDKMVSTGELPEDDEENIRAKEQGILNXXXXXXXXXX 317
           A  + F+R++   ST+R+  + +   +V   ++ E+DEE ++ KEQ IL           
Sbjct: 4   AAVVEFQRAQSLLSTDREASIDILHSIVKR-DIQENDEEAVQVKEQSILELGSLLAKTGQ 62

Query: 318 XXXXXXXXXXTRPFLSLISKAKAAKLVRSLVDFFLDLEAGIGIEVQLCKECIEWAKEERR 497
                      RPFL+ ISKAKAA+LVRSL+D FLD+EA  G EV+LC ECIEWAK E+R
Sbjct: 63  AAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKR 122

Query: 498 TFLRQSLEARLIALYFDTGMY 560
           TFLRQ+LEARL++LYFDT  Y
Sbjct: 123 TFLRQALEARLVSLYFDTKRY 143


>AB003102-1|BAA19748.1|  422|Homo sapiens 26S proteasome subunit
           p44.5 protein.
          Length = 422

 Score =  135 bits (326), Expect = 1e-31
 Identities = 68/141 (48%), Positives = 91/141 (64%)
 Frame = +3

Query: 138 AGAMLFERSRVSSSTNRDEDVRMTDKMVSTGELPEDDEENIRAKEQGILNXXXXXXXXXX 317
           A  + F+R++   ST+R+  + +   +V   ++ E+DEE ++ KEQ IL           
Sbjct: 4   AAVVEFQRAQSLLSTDREASIDILHSIVKR-DIQENDEEAVQVKEQSILELGSLLAKTGQ 62

Query: 318 XXXXXXXXXXTRPFLSLISKAKAAKLVRSLVDFFLDLEAGIGIEVQLCKECIEWAKEERR 497
                      RPFL+ ISKAKAA+LVRSL+D FLD+EA  G EV+LC ECIEWAK E+R
Sbjct: 63  AAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKR 122

Query: 498 TFLRQSLEARLIALYFDTGMY 560
           TFLRQ+LEARL++LYFDT  Y
Sbjct: 123 TFLRQALEARLVSLYFDTKRY 143


>AF001212-1|AAB58732.1|  422|Homo sapiens 26S proteasome subunit 9
           protein.
          Length = 422

 Score =  131 bits (316), Expect = 2e-30
 Identities = 67/141 (47%), Positives = 90/141 (63%)
 Frame = +3

Query: 138 AGAMLFERSRVSSSTNRDEDVRMTDKMVSTGELPEDDEENIRAKEQGILNXXXXXXXXXX 317
           A  + F+R++   ST+R+  + +   +V   ++ E+DEE ++ KEQ IL           
Sbjct: 4   AAVVEFQRAQSLLSTDREASIDILHSIVKR-DIQENDEEAVQVKEQSILELGSLLAKTGQ 62

Query: 318 XXXXXXXXXXTRPFLSLISKAKAAKLVRSLVDFFLDLEAGIGIEVQLCKECIEWAKEERR 497
                      RPFL+ ISKAKAA+LVRSL+D FLD+EA  G EV+LC E IEWAK E+R
Sbjct: 63  AAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLESIEWAKSEKR 122

Query: 498 TFLRQSLEARLIALYFDTGMY 560
           TFLRQ+LEARL++LYFDT  Y
Sbjct: 123 TFLRQALEARLVSLYFDTKRY 143


>BC025249-1|AAH25249.1|  574|Homo sapiens zinc finger and BTB domain
           containing 3 protein.
          Length = 574

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 219 PFCQSCGRLRLCSSMMRRVIFQITSLRPY-CVY-LYAYT 109
           P C++CG+   CS  +RR     T  RPY C Y L +YT
Sbjct: 472 PTCKTCGKTFSCSYTLRRHATVHTRERPYECRYCLRSYT 510


>AK027045-1|BAB15636.1|  574|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ23392 fis, clone HEP17418. ).
          Length = 574

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 219 PFCQSCGRLRLCSSMMRRVIFQITSLRPY-CVY-LYAYT 109
           P C++CG+   CS  +RR     T  RPY C Y L +YT
Sbjct: 472 PTCKTCGKTFSCSYTLRRHATVHTRERPYECRYCLRSYT 510


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,667,141
Number of Sequences: 237096
Number of extensions: 2000747
Number of successful extensions: 4985
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4985
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)